RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SERINC1Q9NRX5 453 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 EXD2Q9NVH0 621 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 CISD1Q9NZ45 108 aaKnown RBP10.27□□□□□ -0.77
USP3-220ENST00000561381 WDR45Q9Y484 360 aa10.27□□□□□ -0.77
USP3-220ENST00000561381 CHD3Q12873 2000 aaKnown RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 A0A1W2PR80 420 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ABCD4O14678 606 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ANKRD28O15084 1053 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 CRLF1O75462 422 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 RAD51DO75771 328 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 PGM3O95394 542 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 SERPINE1P05121 402 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 GGT1P19440 569 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 CCNA2P20248 432 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 UQCRC2P22695 453 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 IDUAP35475 653 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 CDH11P55287 796 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 FOXG1P55316 489 aaPredicted RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 ABCE1P61221 599 aaKnown RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 SPOCK1Q08629 439 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 SPANXN4Q5MJ08 99 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 TIMM23BQ5SRD1 257 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 SAXO2Q658L1 398 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 EMBQ6PCB8 327 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 DNAJC14Q6Y2X3 702 aaPredicted RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 FRRS1Q6ZNA5 592 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 MTDHQ86UE4 582 aaKnown RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 CCDC103Q8IW40 242 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ZNF433Q8N7K0 673 aaPredicted RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 ZNF563Q8TA94 476 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 TMEM234Q8WY98 164 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ARL8AQ96BM9 186 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ZBTB9Q96C00 473 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 ROPN1LQ96C74 230 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 MUCL1Q96DR8 90 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 TRIM44Q96DX7 344 aaPredicted RBP10.26□□□□□ -0.77
USP3-220ENST00000561381 SORT1Q99523 831 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 SAP130Q9H0E3 1048 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 CHRNA9Q9UGM1 479 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 PCDHGB4Q9UN71 923 aa10.26□□□□□ -0.77
USP3-220ENST00000561381 IGKV3D-15A0A087WSY6 115 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 PRSS51A0A1B0GVH4 220 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 OR5H1A6NKK0 313 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 ZNF716A6NP11 495 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 NME5P56597 212 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 CSNK2A1P68400 391 aaPredicted RBP10.25□□□□□ -0.77
USP3-220ENST00000561381 CHRNEQ04844 493 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 DMTNQ08495 405 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 CASP8Q14790 479 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 ETFDHQ16134 617 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 SMU1Q2TAY7 513 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 ATAD3BQ5T9A4 648 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 FBXW9Q5XUX1 488 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 DNM1P46Q6ZS02 220 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 DTX2Q86UW9 622 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 ADGRG3Q86Y34 549 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 UBE2J2Q8N2K1 259 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 OR52N5Q8NH56 324 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 SLC25A43Q8WUT9 341 aaPredicted RBP10.25□□□□□ -0.77
USP3-220ENST00000561381 CNOT9Q92600 299 aaKnown RBP10.25□□□□□ -0.77
USP3-220ENST00000561381 TESCQ96BS2 214 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 NEURL3Q96EH8 262 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 TEX37Q96LM6 180 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 ZIM3Q96PE6 472 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 SLC35A5Q9BS91 424 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 NUF2Q9BZD4 464 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 B3GALT5Q9Y2C3 310 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 SLC35A3Q9Y2D2 325 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 NOSIPQ9Y314 301 aaKnown RBP10.25□□□□□ -0.77
USP3-220ENST00000561381 PLCE1Q9P212 2302 aa10.25□□□□□ -0.77
USP3-220ENST00000561381 E7EQL1 145 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 AP3D1O14617 1153 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 WIPF1O43516 503 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 PMS2P2O95744 297 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 MYZAPP0CAP1 466 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 CHI3L1P36222 383 aaPredicted RBP10.24□□□□□ -0.77
USP3-220ENST00000561381 APOBEC1P41238 236 aaKnown RBP10.24□□□□□ -0.77
USP3-220ENST00000561381 IDH2P48735 452 aaKnown RBP10.24□□□□□ -0.77
USP3-220ENST00000561381 KHKP50053 298 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 RPL14P50914 215 aaKnown RBP10.24□□□□□ -0.77
USP3-220ENST00000561381 ZNF83P51522 516 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 OR2B6P58173 313 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 IRX1P78414 480 aaPredicted RBP10.24□□□□□ -0.77
USP3-220ENST00000561381 KCNJ10P78508 379 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 MPP2Q14168 576 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 PDK3Q15120 406 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 KRT71Q3SY84 523 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 FAM174BQ3ZCQ3 159 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 GPAT3Q53EU6 434 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 AP1ARQ63HQ0 302 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 B3GLCTQ6Y288 498 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 GRINAQ7Z429 371 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 P2RY8Q86VZ1 359 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 RNF130Q86XS8 419 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 ARFGAP2Q8N6H7 521 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 ANKFN1Q8N957 763 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 ZNF511Q8NB15 262 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 OR52E4Q8NGH9 312 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 HTRA1Q92743 480 aa10.24□□□□□ -0.77
USP3-220ENST00000561381 APH1AQ96BI3 265 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms