RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CBFBQ13951 182 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 BTBD16Q32M84 506 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 TIPARPQ7Z3E1 657 aaKnown RBP11.57□□□□□ -0.56
USP3-213ENST00000559711 SLC46A3Q7Z3Q1 461 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 GLRX5Q86SX6 157 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 ERI1Q8IV48 349 aaKnown RBP11.57□□□□□ -0.56
USP3-213ENST00000559711 ZNF563Q8TA94 476 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 SLC22A8Q8TCC7 542 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 GPR119Q8TDV5 335 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 DUSP19Q8WTR2 217 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 RAB2BQ8WUD1 216 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 YIPF6Q96EC8 236 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 TMEM80Q96HE8 168 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 PLEKHA8Q96JA3 519 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 COG8Q96MW5 612 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 FUNDC2Q9BWH2 189 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 FN3KQ9H479 309 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 MMP25Q9NPA2 562 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 WARS2Q9UGM6 360 aaKnown RBP11.57□□□□□ -0.56
USP3-213ENST00000559711 BAIAP2Q9UQB8 552 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 GPR52Q9Y2T5 361 aa11.57□□□□□ -0.56
USP3-213ENST00000559711 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.56□□□□□ -0.56
USP3-213ENST00000559711 C17orf51A8MQB3 221 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 TNFRSF10AO00220 468 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 SOCS6O14544 535 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 SCO2O43819 266 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 MAN1A2O60476 641 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 CDC40O60508 579 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP3-213ENST00000559711 OR2J2O76002 312 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 OR7A10O76100 309 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 SLC2A10O95528 541 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 CDK4P11802 303 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 ITPKBP27987 946 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 PSMB9P28065 219 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 TACR3P29371 465 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 MLLT10P55197 1068 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 FOXK2Q01167 660 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 EGR4Q05215 589 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 C17orf67Q0P5P2 114 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 TCF15Q12870 199 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 TOMM34Q15785 309 aaPredicted RBP11.56□□□□□ -0.56
USP3-213ENST00000559711 KLHL22Q53GT1 634 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 NXNL2Q5VZ03 156 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 OR11G2Q8NGC1 345 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 B4GALNT2Q8NHY0 566 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 RFKQ969G6 155 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 DEPDC7Q96QD5 511 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 BCL7BQ9BQE9 202 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 IFT27Q9BW83 186 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 GPN2Q9H9Y4 310 aaPredicted RBP11.56□□□□□ -0.56
USP3-213ENST00000559711 CMC2Q9NRP2 79 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 ENPP5Q9UJA9 477 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 OSGIN1Q9UJX0 560 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP3-213ENST00000559711 DIMT1Q9UNQ2 313 aaKnown RBP11.56□□□□□ -0.56
USP3-213ENST00000559711 ZNF337Q9Y3M9 751 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 PCDHGB6Q9Y5F9 930 aa11.56□□□□□ -0.56
USP3-213ENST00000559711 IRGMA1A4Y4 181 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 M0R082 166 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 NDUFB2O95178 105 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 ATE1O95260 518 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 PTHP01270 115 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 ADORA3P0DMS8 318 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 PEPDP12955 493 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 GP1BBP13224 206 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 SLC6A6P31641 620 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 MTNR1AP48039 350 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 RPS4XP62701 263 aaKnown RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 RAB40BQ12829 278 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 LSAMPQ13449 338 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 TRIP6Q15654 476 aaKnown RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 NTRK2Q16620 822 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 ZNF362Q5T0B9 420 aaPredicted RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 DHRS13Q6UX07 377 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 SLC16A12Q6ZSM3 486 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 NDUFAF7Q7L592 441 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 OR52I1Q8NGK6 324 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 OR5M3Q8NGP4 307 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 CT55Q8WUE5 264 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 LGALS12Q96DT0 336 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 RASL10BQ96S79 203 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 MYCBPQ99417 103 aaPredicted RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 FGF20Q9NP95 211 aaPredicted RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 HINT3Q9NQE9 182 aaKnown RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 TCFL5Q9UL49 500 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 VGLL3A8MV65 326 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 NOL3O60936 208 aaKnown RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 TCN2P20062 427 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 PAX7P23759 505 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 CXCR1P25024 350 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 HTR1FP30939 366 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 SH3BGRP55822 239 aaPredicted RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 SUMO3P55854 103 aaPredicted RBP11.55□□□□□ -0.56
USP3-213ENST00000559711 DLX5P56178 289 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 QPRTQ15274 297 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 ZNF74Q16587 644 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 TIGD6Q17RP2 521 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 COL28A1Q2UY09 1125 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 C3orf38Q5JPI3 329 aa11.55□□□□□ -0.56
USP3-213ENST00000559711 TMEM164Q5U3C3 297 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms