RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 NPR2P20594 1047 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 HOXD10P28358 340 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 AQP1P29972 269 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 GNA11P29992 359 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CCR1P32246 355 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 UGT1A5P35504 534 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RPL13AP40429 203 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 PTGDSP41222 190 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 OR3A4PP47883 348 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 GSSP48637 474 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CEBPDP49716 269 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 DAP3P51398 398 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 SLC8A3P57103 927 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 DSCR10P59022 87 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RPL32P62910 135 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 CCNA1P78396 465 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 KLRC3Q07444 240 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 BCL2L1Q07817 233 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CD47Q08722 323 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 GSG1Q2KHT4 349 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ISXQ2M1V0 245 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 FILIP1LQ4L180 1135 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 BCL7AQ4VC05 210 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 HIGD2BQ4VC39 106 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 HSP90AB3PQ58FF7 597 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CARD16Q5EG05 197 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ATAD3CQ5T2N8 411 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 PRAMEF5Q5TYX0 476 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 PRAMEF6Q5VXH4 476 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 SLC22A10Q63ZE4 541 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ENPP6Q6UWR7 440 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 C2orf66Q6UXQ4 117 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 FRA10AC1Q70Z53 315 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 PGAP1Q75T13 922 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 NLRP9Q7RTR0 991 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ASCL5Q7RTU5 278 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 TRPM8Q7Z2W7 1104 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CDR2LQ86X02 465 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 C17orf82Q86X59 251 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 NBPF5PQ86XG9 351 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 ECHDC2Q86YB7 292 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 FBXO16Q8IX29 292 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 SKA3Q8IX90 412 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 KIR2DL5AQ8N109 375 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 UBE2J2Q8N2K1 259 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 MTURNQ8N3F0 131 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 OR10H4Q8NGA5 316 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 OR56B2PQ8NGI1 322 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 KIR2DL5BQ8NHK3 375 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 TFB1MQ8WVM0 346 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 DNAJA4Q8WW22 397 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 IL1F10Q8WWZ1 152 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 FGF11Q92914 225 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.22□□□□□ -2.21
USP3-209ENST00000558925 CNOT6LQ96LI5 555 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 OXGR1Q96P68 337 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RBM14Q96PK6 669 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 PANX2Q96RD6 677 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 PSMB7Q99436 277 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 SLC35A5Q9BS91 424 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CHRDL1Q9BU40 450 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 PARD6BQ9BYG5 372 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 DEFB126Q9BYW3 111 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 NAT10Q9H0A0 1025 aaKnown RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 RBKSQ9H477 322 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RNF167Q9H6Y7 350 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ZFP14Q9HCL3 533 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RPS10P5Q9NQ39 176 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 SLC7A10Q9NS82 523 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 ETNK2Q9NVF9 386 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 C6orf203Q9P0P8 240 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 ZNF107Q9UII5 783 aaPredicted RBP1.22□□□□□ -2.21
USP3-209ENST00000558925 PHF11Q9UIL8 331 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 MOKQ9UQ07 419 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 CSAG2Q9Y5P2 127 aa1.22□□□□□ -2.21
USP3-209ENST00000558925 RPAP1Q9BWH6 1393 aaPredicted RBP1.21□□□□□ -2.21
USP3-209ENST00000558925 IGLV8-61A0A075B6I0 122 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 IGHV1OR15-1A0A075B7D0 117 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 A0A0G2JLM5 398 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 KLF18A0A0U1RQI7 1052 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 A0A1W2PPE3 182 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 A0A1W2PPV9 198 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CTAGE15A4D2H0 777 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CCDC169A6NNP5 214 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ZNF716A6NP11 495 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 IDSB3KWA1 339 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 B4DXG7 233 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 HAS3O00219 553 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 DCTN6O00399 190 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 ABCD4O14678 606 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 HSD17B6O14756 317 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 BCL2L11O43521 198 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 HCN1O60741 890 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 UPK3AO75631 287 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 UGT2B17O75795 530 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 CABYRO75952 493 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 SCGNO76038 276 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 OXSR1O95747 527 aaPredicted RBP1.21□□□□□ -2.22
USP3-209ENST00000558925 LGALS2P05162 132 aa1.21□□□□□ -2.22
USP3-209ENST00000558925 TPM2P07951 284 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms