RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	DPEP2	Q9H4A9	486 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	HRASLS	Q9HDD0	168 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLEKHB1	Q9UF11	243 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNFX1	Q9P2E3	1918 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF236	Q9UL36	1845 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005		K7ESM1	405 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SCO2	O43819	266 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	VEGFD	O43915	354 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MTRF1	O75570	445 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	FGF18	O76093	207 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB3D	O95716	219 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TNF	P01375	233 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	HLA-A	P01891	365 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PET100	P0DJ07	73 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CYBA	P13498	195 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TYRP1	P17643	537 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDK2	P24941	298 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACTR1B	P42025	376 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SELENOP	P49908	381 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRKX	P51817	358 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	AKR1C2	P52895	323 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACTR1A	P61163	376 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	FOXK2	Q01167	660 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	AKR1C1	Q04828	323 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ST3GAL2	Q16842	350 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM35A	Q53FP2	167 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PAN3	Q58A45	887 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM74A1	Q5RGS3	127 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	C17orf107	Q6ZR85	190 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	BHLHA9	Q7RTU4	235 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RELL2	Q8NC24	303 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SEC22A	Q96IW7	307 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SULT4A1	Q9BR01	284 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM106C	Q9BVX2	250 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC38A1	Q9H2H9	487 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	GLIPR2	Q9H4G4	154 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC6A20	Q9NP91	592 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	INPP5E	Q9NRR6	644 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ABRACL	Q9P1F3	81 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	KIF25	Q9UIL4	384 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	NEU3	Q9UQ49	428 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCL26	Q9Y258	94 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC6A5	Q9Y345	797 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A1W2PP55	124 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SDC3	O75056	442 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SNAPIN	O95295	136 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ERCC1	P07992	297 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	GP1BB	P13224	206 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SRM	P19623	302 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CD79B	P40259	229 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RIDA	P52758	137 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	REEP5	Q00765	189 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TDG	Q13569	410 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ALG10	Q5BKT4	473 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MRPL2	Q5T653	305 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC18B1	Q6NT16	456 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RSPO2	Q6UXX9	243 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZER1	Q7Z7L7	766 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF546	Q86UE3	836 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	COMTD1	Q86VU5	262 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CMIP	Q8IY22	773 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	C12orf45	Q8N5I9	185 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACOT4	Q8N9L9	421 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5T2	Q8NGG2	359 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR1J4	Q8NGS1	313 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR52I2	Q8NH67	350 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MFSD8	Q8NHS3	518 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRMT61A	Q96FX7	289 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MED18	Q9BUE0	208 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	G6PC3	Q9BUM1	346 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	C20orf24	Q9BUV8	137 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF768	Q9H5H4	540 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	WASH6P	Q9NQA3	447 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MARCH5	Q9NX47	278 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF281	Q9Y2X9	895 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR52A4P	A6NMU1	304 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RNGTT	O60942	597 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	IFNA17	P01571	189 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADRB1	P08588	477 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TPT1	P13693	172 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	BCL6	P41182	706 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SNU13	P55769	128 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	WNT3	P56703	355 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CTXN1	P60606	82 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SPOCK1	Q08629	439 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC9A3R2	Q15599	337 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	DEFB110	Q30KQ9	67 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	AVPI1	Q5T686	147 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRSS42	Q7Z5A4	293 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	LIX1L	Q8IVB5	337 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	BPIFC	Q8NFQ6	507 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR52E1	Q8NGJ3	308 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR51T1	Q8NGJ9	327 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	RASD2	Q96D21	266 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	AMDHD1	Q96NU7	426 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TNFRSF13C	Q96RJ3	184 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDC6	Q99741	560 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SYT17	Q9BSW7	474 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CPEB1	Q9BZB8	566 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TBL1XR1	Q9BZK7	514 aa		4.64	□□□□□ -1.67

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