RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 NOGQ13253 232 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 TCTE1Q5JU00 501 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 Q6ZTK2 550 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 RFLNBQ8N5W9 214 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 GAL3ST3Q96A11 431 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 PELI1Q96FA3 418 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 OR14A2Q96R54 314 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 DDOQ99489 341 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 PLEKHA1Q9HB21 404 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 NRIP3Q9NQ35 241 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 NANSQ9NR45 359 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 KIF25Q9UIL4 384 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 LTBP2Q14767 1821 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 A0A1B0GUH1 482 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 ZNF749O43361 778 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 TFP02787 698 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 PEBP1P30086 187 aaKnown RBP16.2■□□□□ 0.18
SYNE3-202ENST00000553340 HCCSP53701 268 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 AP3S2P59780 193 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 SIRPAP78324 504 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 OPCMLQ14982 345 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 DCST2Q5T1A1 773 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 CHMP1BQ7LBR1 199 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 UBE2Q1Q7Z7E8 422 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 SFTPA1Q8IWL2 248 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 OR4N5Q8IXE1 308 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 SYS1Q8N2H4 156 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 FAM71CQ8NEG0 241 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 CHIAQ9BZP6 476 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 OR10A4Q9H209 315 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 MEPEQ9NQ76 525 aaPredicted RBP16.2■□□□□ 0.18
SYNE3-202ENST00000553340 KCMF1Q9P0J7 381 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 HCN3Q9P1Z3 774 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 SCN3AQ9NY46 2000 aa16.2■□□□□ 0.18
SYNE3-202ENST00000553340 PEX12O00623 359 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 ZNF888P0CJ79 500 aaPredicted RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 MAT2AP31153 395 aaKnown RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 RPE65Q16518 533 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 ZNF425Q6IV72 752 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 ARHGAP11AQ6P4F7 1023 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 PRSS42Q7Z5A4 293 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 TOX2Q96NM4 488 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 TIMM29Q9BSF4 260 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 NPDC1Q9NQX5 325 aaPredicted RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 TBX21Q9UL17 535 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 TRBV2A0A0J9YWF9 115 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 ANKRD61A6NGH8 418 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 MAGEB4O15481 346 aaPredicted RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 HRGP04196 525 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 OR2T7P0C7T2 308 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 BAMBIQ13145 260 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 GAS6Q14393 721 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 ELFN2Q5R3F8 820 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 RPL22L1Q6P5R6 122 aaKnown RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 KANSL1Q7Z3B3 1105 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 OR2T27Q8NH04 317 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 LCORQ96JN0 433 aaPredicted RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 DERL3Q96Q80 235 aa16.19■□□□□ 0.18
SYNE3-202ENST00000553340 USP36Q9P275 1121 aaKnown RBP16.19■□□□□ 0.18
SYNE3-202ENST00000553340 NPIPA5A0A0B4J1W7 369 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ZNF879B4DU55 563 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 NPIPA7E9PJI5 369 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 GABARAPH6UMI1 98 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 BET1O15155 118 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ADRB1P08588 477 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 NPIPA8P0DM63 369 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 SLC6A6P31641 620 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 RPS11P62280 158 aaKnown RBP eCLIP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 TRMT12Q53H54 448 aaKnown RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 CACUL1Q86Y37 369 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 MRPL43Q8N983 215 aaKnown RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 SNX33Q8WV41 574 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 PIGKQ92643 395 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ZMYND19Q96E35 227 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 HHIPL1Q96JK4 782 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 TNFRSF13CQ96RJ3 184 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 PPA2Q9H2U2 334 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 TMEM27Q9HBJ8 222 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ADAP2Q9NPF8 381 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ZDHHC4Q9NPG8 344 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 PHPT1Q9NRX4 125 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 KLHL9Q9P2J3 617 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 MGAT4CQ9UBM8 478 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 KCNE5Q9UJ90 142 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 PLEKHM1Q9Y4G2 1056 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ALDOBP05062 364 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 SIM1P81133 766 aaPredicted RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 DGLUCYQ7Z3D6 616 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 OR6V1Q8N148 313 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ARL14Q8N4G2 192 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 OR52I2Q8NH67 350 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 GRHL3Q8TE85 626 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 CNN2Q99439 309 aaKnown RBP16.18■□□□□ 0.18
SYNE3-202ENST00000553340 PRSS16Q9NQE7 514 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 CREBZFQ9NS37 354 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 C14orf105Q9NVL8 296 aa16.18■□□□□ 0.18
SYNE3-202ENST00000553340 ARPC1BO15143 372 aaKnown RBP16.17■□□□□ 0.18
SYNE3-202ENST00000553340 MID1O15344 667 aa16.17■□□□□ 0.18
SYNE3-202ENST00000553340 IRF4Q15306 451 aa16.17■□□□□ 0.18
SYNE3-202ENST00000553340 TMEM255AQ5JRV8 349 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms