RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 C7orf57Q8NEG2 295 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR2T35Q8NGX2 323 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR56A3Q8NH54 315 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 FLVCR1-AS1Q8TAF5 88 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 KCNE4Q8WWG9 221 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SLC41A2Q96JW4 573 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 THAP7Q9BT49 309 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 NTMT1Q9BV86 223 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TSSK6Q9BXA6 273 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SPRY4Q9C004 299 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TPT1P8Q9HAU6 139 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ACTR10Q9NZ32 417 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 EXTL2Q9UBQ6 330 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 LOC105369274A0A096LPK9 316 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RRP8O43159 456 aaKnown RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SULT1B1O43704 296 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TOXO94900 526 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 GADD45GO95257 159 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RAB36O95755 333 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 GASTP01350 101 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RPN2P04844 631 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 FGF2P09038 288 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 NR2F6P10588 404 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PEPDP12955 493 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 UGT2B7P16662 529 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 NPPBP16860 134 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RHCEP18577 417 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 FGF9P31371 208 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 GABRA5P31644 462 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RAB28P51157 221 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SMSP52788 366 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PNLIPRP1P54315 467 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 WNT4P56705 351 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TSPAN5P62079 268 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 RPS7P62081 194 aaKnown RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TAP2Q03519 686 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SRSF11Q05519 484 aaKnown RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CHIT1Q13231 466 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 LTB4RQ15722 352 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ZIC1Q15915 447 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 DCAF12Q5T6F0 453 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM164Q5U3C3 297 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PRAMEF17Q5VTA0 474 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 FAM198BQ6UWH4 519 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TMEM91Q6ZNR0 172 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TIPARPQ7Z3E1 657 aaKnown RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ASPGQ86U10 573 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 DCUN1D3Q8IWE4 304 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR4N4Q8N0Y3 316 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 STPG2Q8N412 459 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 C11orf65Q8NCR3 313 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 VPS37AQ8NEZ2 397 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SLC22A8Q8TCC7 542 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 MAL2Q969L2 176 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SENP5Q96HI0 755 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-216ENST00000552909 SFXN2Q96NB2 322 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR4K3Q96R72 315 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PIP5K1AQ99755 562 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 TWSG1Q9GZX9 223 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 FAM60AQ9NP50 221 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 COA4Q9NYJ1 87 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 OR6C2Q9NZP2 312 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PILRAQ9UKJ1 303 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 ACSL6Q9UKU0 697 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CORO2BQ9UQ03 480 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 PCDHB11Q9Y5F2 797 aa7.08□□□□□ -1.28
LIMA1-216ENST00000552909 CFAP46Q8IYW2 2715 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 HEATR5BQ9P2D3 2071 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 ARRDC5A6NEK1 342 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 C2orf74A8MZ97 194 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 H7C2Y5 167 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 J3KTA2 159 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 AIPO00170 330 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 LANCL1O43813 399 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PRAMEF4O60810 478 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 NCR1O76036 304 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PDYNP01213 254 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 APOC3P02656 99 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 TCRBP04435 133 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 LPLP06858 475 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 CTSBP07858 339 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 NMBP08949 121 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 ELK1P19419 428 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PRPS1L1P21108 318 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PPIBP23284 216 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PSMB5P28074 263 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 BTCP35070 178 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 FEN1P39748 380 aaKnown RBP7.07□□□□□ -1.28
LIMA1-216ENST00000552909 LIMS1P48059 325 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 MEOX2P50222 304 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 HSD11B2P80365 405 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 FABP5Q01469 135 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 IRF8Q02556 426 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 TPBGQ13641 420 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 HEPACAMQ14CZ8 416 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 XKR6Q5GH73 641 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 PRAMEF9Q5VWM5 478 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 NLRC3Q7RTR2 1065 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 KRT74Q7RTS7 529 aa7.07□□□□□ -1.28
LIMA1-216ENST00000552909 HSD17B13Q7Z5P4 300 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms