RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 FAM83FQ8NEG4 500 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 C9orf43Q8TAL5 461 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 TMEM239Q8WW34 195 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SLC25A18Q9H1K4 315 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 FANCFQ9NPI8 374 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 MEPEQ9NQ76 525 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 CTPS2Q9NRF8 586 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 USE1Q9NZ43 259 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 STOML1Q9UBI4 398 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 RPS6KB2Q9UBS0 482 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 CHRNA9Q9UGM1 479 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 LHX6Q9UPM6 363 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 SAMHD1Q9Y3Z3 626 aaKnown RBP8.66□□□□□ -1.02
LIMA1-211ENST00000552338 AP4B1Q9Y6B7 739 aa8.66□□□□□ -1.02
LIMA1-211ENST00000552338 CFAP47Q6ZTR5 3102 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TMED7-TICAM2A0A0A6YYA0 188 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TRBV4-1A0A0J9YWV2 114 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 OR2M5A3KFT3 312 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 A8MVM7 634 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 G3V2T6 193 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 GNGT2O14610 69 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 DNPH1O43598 174 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 OR2T1O43869 369 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 ACTL6AO96019 429 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 CRYABP02511 175 aaKnown RBP8.65□□□□□ -1.02
LIMA1-211ENST00000552338 HK1P19367 917 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 CBLP22681 906 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 GSSP48637 474 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 PPP2R2BQ00005 443 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 FOXF1Q12946 379 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 SLC10A1Q14973 349 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 SEC23BQ15437 767 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 EXOC3L2Q2M3D2 409 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.65□□□□□ -1.02
LIMA1-211ENST00000552338 ANKDD1AQ495B1 522 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 RNFT1Q5M7Z0 435 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 KDM4DQ6B0I6 523 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 C3orf33Q6P1S2 294 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TTC33Q6PID6 262 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-211ENST00000552338 PCSK4Q6UW60 755 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TMCO5AQ8N6Q1 288 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 Q8NA96 180 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 OR4K5Q8NGD3 323 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 GIPC3Q8TF64 312 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 RDH12Q96NR8 316 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TAAR6Q96RI8 345 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 NPAS1Q99742 590 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 C9orf16Q9BUW7 83 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 KLHL4Q9C0H6 718 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 KLHL1Q9NR64 748 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 SERINC1Q9NRX5 453 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 SELENONQ9NZV5 590 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 MGAT4BQ9UQ53 548 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TRAPPC4Q9Y296 219 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TMED7Q9Y3B3 224 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 HDGFL3Q9Y3E1 203 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 TESMINQ9Y4I5 508 aa8.65□□□□□ -1.02
LIMA1-211ENST00000552338 SPIN1Q9Y657 262 aaPredicted RBP8.65□□□□□ -1.02
LIMA1-211ENST00000552338 MED12Q93074 2177 aa8.65□□□□□ -1.03
LIMA1-211ENST00000552338 ACACBO00763 2458 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 MGAQ8IWI9 3026 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CHD8Q9HCK8 2581 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 TMEM72A0PK05 275 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ELOA3DA6NLF2 546 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-211ENST00000552338 FAM47E-STBD1D6RA91 191 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 FTCDNL1E5RQL4 147 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 G3V3Y1 287 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 H0Y3Z8 333 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CCNB2O95067 398 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 WISP1O95388 367 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 NUDT14O95848 222 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 HPRP00739 348 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ADAP00813 363 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 MT-ATP6P00846 226 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ALPLP05186 524 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 FAM87AP0C7U9 286 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CPN1P15169 458 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CXCR1P25024 350 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 GDF1P27539 372 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 IFNGR2P38484 337 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 RNF144AP50876 292 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CCR4P51679 360 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 IST1P53990 364 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 UGT2B15P54855 530 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 PPIAP62937 165 aaKnown RBP8.64□□□□□ -1.03
LIMA1-211ENST00000552338 MFSD13AQ14CX5 517 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ELOA3BQ3SY89 546 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 KRTCAP3Q53RY4 240 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CMPK2Q5EBM0 449 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 FAM69AQ5T7M9 428 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 VASNQ6EMK4 673 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 PGBD2Q6P3X8 592 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 TBPL2Q6SJ96 375 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 PRICKLE2Q7Z3G6 844 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ZER1Q7Z7L7 766 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 SLC43A2Q8N370 569 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 PARP8Q8N3A8 854 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CADM2Q8N3J6 435 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CLDN22Q8N7P3 220 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ELOA3Q8NG57 546 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms