RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 OBP2BQ9NPH6 170 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 SIRT3Q9NTG7 399 aaPredicted RBP14.8□□□□□ -0.04
VPS29-204ENST00000548259 ACER3Q9NUN7 267 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 SLC9A8Q9Y2E8 581 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 DUXAA6NLW8 204 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 NPIPB9F8W1W9 429 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 EIF1BO60739 113 aaKnown RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 AK1P00568 194 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 ITGA5P08648 1049 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 EFNA1P20827 205 aaPredicted RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 MAPK1P28482 360 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 RPL38P63173 70 aaKnown RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 PDZK1Q5T2W1 519 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 MALRD1Q5VYJ5 2156 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 EIF3MQ7L2H7 374 aaKnown RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 SPATA19Q7Z5L4 167 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 ABHD12BQ7Z5M8 362 aaPredicted RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 WDR31Q8NA23 367 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 IFT81Q8WYA0 676 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 C1orf159Q96HA4 380 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 FCRL1Q96LA6 429 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 PRPF18Q99633 342 aaKnown RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 NAA11Q9BSU3 229 aaPredicted RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 MOV10Q9HCE1 1003 aaKnown RBP14.79□□□□□ -0.04
VPS29-204ENST00000548259 CHRNA9Q9UGM1 479 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 BAIAP2L1Q9UHR4 511 aa14.79□□□□□ -0.04
VPS29-204ENST00000548259 ESPNB1AK53 854 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 PDE5AO76074 875 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 CRYAAP02489 173 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 APEX1P27695 318 aaKnown RBP14.78□□□□□ -0.04
VPS29-204ENST00000548259 MPGP29372 298 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 SLC1A3P43003 542 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 OR2B6P58173 313 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 DNAJB13P59910 316 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 ACTG1P63261 375 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 SKP2Q13309 424 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 MST1LQ2TV78 715 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 C9orf135Q5VTT2 229 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.78□□□□□ -0.04
VPS29-204ENST00000548259 C3orf56Q8N813 242 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 OR52E4Q8NGH9 312 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 SFXN5Q8TD22 340 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 CA10Q9NS85 328 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 ATP6V1HQ9UI12 483 aa14.78□□□□□ -0.04
VPS29-204ENST00000548259 YLPM1P49750 1951 aaKnown RBP14.77□□□□□ -0.04
VPS29-204ENST00000548259 DNAJA2O60884 412 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 GLRA3O75311 464 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 STX11O75558 287 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 ABHD2P08910 425 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 UBTFL6P0CB48 400 aaPredicted RBP14.77□□□□□ -0.05
VPS29-204ENST00000548259 PPOXP50336 477 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 IDH3GP51553 393 aaPredicted RBP14.77□□□□□ -0.05
VPS29-204ENST00000548259 GPR68Q15743 365 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 ZNF141Q15928 474 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 GALNTL6Q49A17 601 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 RFTN2Q52LD8 501 aaPredicted RBP14.77□□□□□ -0.05
VPS29-204ENST00000548259 CLEC6AQ6EIG7 209 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 RNF165Q6ZSG1 346 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 GRINAQ7Z429 371 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 ANKS4BQ8N8V4 417 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 CCDC63Q8NA47 563 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 PSMA8Q8TAA3 256 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 NEU4Q8WWR8 484 aaPredicted RBP14.77□□□□□ -0.05
VPS29-204ENST00000548259 OIT3Q8WWZ8 545 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 SDF2Q99470 211 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 TRAPPC4Q9Y296 219 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 SLC35A3Q9Y2D2 325 aa14.77□□□□□ -0.05
VPS29-204ENST00000548259 LRP5LA4QPB2 252 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 G3V2L1 256 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 PDLIM1O00151 329 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 AZIN1O14977 448 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 SCAMP2O15127 329 aaKnown RBP14.76□□□□□ -0.05
VPS29-204ENST00000548259 CFLARO15519 480 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 KRT33AO76009 404 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 BCKDHAP12694 445 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 DAOP14920 347 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 GIFP27352 417 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 SLC35A1P78382 337 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 EFNB3Q15768 340 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 CCDC153Q494R4 210 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 POMGNT2Q8NAT1 580 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 ANP32BQ92688 251 aaKnown RBP14.76□□□□□ -0.05
VPS29-204ENST00000548259 PMM1Q92871 262 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 ZNF524Q96C55 264 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 OR7D2Q96RA2 312 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 KATNB1Q9BVA0 655 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 CTPS2Q9NRF8 586 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 SLC7A10Q9NS82 523 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 EXD2Q9NVH0 621 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 GPATCH2Q9NW75 528 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 TMEM181Q9P2C4 612 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 FIS1Q9Y3D6 152 aa14.76□□□□□ -0.05
VPS29-204ENST00000548259 LSM1O15116 133 aaKnown RBP14.75□□□□□ -0.05
VPS29-204ENST00000548259 LYPLA1O75608 230 aaPredicted RBP14.75□□□□□ -0.05
VPS29-204ENST00000548259 URI1O94763 535 aaPredicted RBP14.75□□□□□ -0.05
VPS29-204ENST00000548259 STAMBPO95630 424 aa14.75□□□□□ -0.05
VPS29-204ENST00000548259 TACSTD2P09758 323 aa14.75□□□□□ -0.05
VPS29-204ENST00000548259 OR4A8P0C604 315 aa14.75□□□□□ -0.05
VPS29-204ENST00000548259 LINC00032P0C843 101 aa14.75□□□□□ -0.05
VPS29-204ENST00000548259 HTR3AP46098 478 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms