RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 EOGTQ5NDL2 527 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GCNT6Q5T4J0 391 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ZNF626Q68DY1 528 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TRAT1Q6PIZ9 186 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DEGS2Q6QHC5 323 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 USP53Q70EK8 1073 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 PRSS33Q8NF86 280 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SMIM4Q8WVI0 70 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ST8SIA2Q92186 375 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 C1GALT1C1Q96EU7 318 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ELMOD3Q96FG2 381 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LYSMD1Q96S90 227 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ORAI3Q9BRQ5 295 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LRFN3Q9BTN0 628 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 QRSL1Q9H0R6 528 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 C20orf85Q9H1P6 137 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LRRN3Q9H3W5 708 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CCDC86Q9H6F5 360 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 TMEM138Q9NPI0 162 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TMEM184CQ9NVA4 438 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RLIMQ9NVW2 624 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ELOVL2Q9NXB9 296 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 STOX2Q9P2F5 926 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 DEC1Q9P2X7 70 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 IL19Q9UHD0 177 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RUVBL1Q9Y265 456 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 SIT1Q9Y3P8 196 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CHST2Q9Y4C5 530 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 EDDM13A0A1B0GTR0 161 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 C5orf52A6NGY3 159 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 FAM74A7A6NL05 159 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GABRPO00591 440 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SPINT1O43278 529 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SSNA1O43805 119 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TBL1XO60907 577 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DIRAS1O95057 198 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SERPINA3P01011 423 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TFP02787 698 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 PRG2P13727 222 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 PVALBP20472 110 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 MPGP29372 298 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SSTR4P31391 388 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CCR9P51686 369 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 XKP51811 444 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DLX5P56178 289 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RAB5BP61020 215 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RPS24P62847 133 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 MC2RQ01718 297 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 NKPD1Q17RQ9 610 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 FAM74A3Q4VXF1 159 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ENTPD8Q5MY95 495 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 HENMT1Q5T8I9 393 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 CEACAM20Q6UY09 585 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SYT14Q8NB59 555 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 WDR20Q8TBZ3 569 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 PHYHIPQ92561 330 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RFKQ969G6 155 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SPACA9Q96E40 222 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 ZNF582Q96NG8 517 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 SLC38A1Q9H2H9 487 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 BRF2Q9HAW0 419 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DNAJC11Q9NVH1 559 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SOHLH2Q9NX45 425 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GPR160Q9UJ42 338 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GAB2Q9UQC2 676 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ANGPT4Q9Y264 503 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 NUP205Q92621 2012 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CUL9Q8IWT3 2517 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TRAV1-2A0A0B4J238 106 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 hCG_1809904A0A1W2PP81 198 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 A0A1W2PPE2 198 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LOC390937A0A1W2PQ73 354 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 A0A1W2PR64 198 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ANXA2P2A6NMY6 339 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SCAMP2O15127 329 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 SLC16A5O15375 505 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 OR1I1O60431 355 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LRP3O75074 770 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CDC123O75794 336 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 IFNA10P01566 189 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RLN2P04090 185 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 IFNW1P05000 195 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 MELTFP08582 738 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ARAFP10398 606 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DGKAP23743 735 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 ATP5A1P25705 553 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 NTSR1P30989 418 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 BMI1P35226 326 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CHI3L1P36222 383 aaPredicted RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 ETV5P41161 510 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CSKP41240 450 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 AVPR1BP47901 424 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 AKR1D1P51857 326 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TAS2R43P59537 309 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 MXD1Q05195 221 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CHIT1Q13231 466 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GPR68Q15743 365 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 UGT8Q16880 541 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 SYT14P1Q58G82 188 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TMEM31Q5JXX7 168 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms