RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TPO	P07202	933 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	H1F0	P07305	194 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	THRB	P10828	461 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	HOXB6	P17509	224 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	PTN	P21246	168 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	FKBP2	P26885	142 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	TDGF1P3	P51864	188 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	MAP2K6	P52564	334 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	RPS3A	P61247	264 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	TLE1	Q04724	770 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	TRAM2	Q15035	370 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	C3AR1	Q16581	482 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	SGCB	Q16585	318 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	GXYLT1	Q4G148	440 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	FGD3	Q5JSP0	725 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	VASN	Q6EMK4	673 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	C3orf33	Q6P1S2	294 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF585A	Q6P3V2	769 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	TTC33	Q6PID6	262 aa	Predicted RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	RRM2B	Q7LG56	351 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	PIWIL3	Q7Z3Z3	882 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	P3H2	Q8IVL5	708 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	C10orf53	Q8N6V4	93 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR52J3	Q8NH60	311 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	PHF10	Q8WUB8	498 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC25A43	Q8WUT9	341 aa	Predicted RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	STMN2	Q93045	179 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	DNAJA3	Q96EY1	480 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	MPP4	Q96JB8	637 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	KLHL15	Q96M94	604 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	BARD1	Q99728	777 aa	Known RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR11A1	Q9GZK7	315 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	NMNAT1	Q9HAN9	279 aa	Predicted RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	C12orf10	Q9HB07	376 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	PLSCR2	Q9NRY7	297 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	CCM2L	Q9NUG4	571 aa	Predicted RBP	9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	AP4S1	Q9Y587	144 aa		9.16	□□□□□ -0.94
CPSF7-221	ENST00000543545	CPAMD8	Q8IZJ3	1885 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A087WUJ7	227 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545		A0A1W2PNR3	127 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545		H0YC42	278 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TNFRSF11B	O00300	401 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	KPNA4	O00629	521 aa	Predicted RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRRG2	O14669	202 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TNFSF11	O14788	317 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	FFAR1	O14842	300 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF208	O43345	1280 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SEMA7A	O75326	666 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TIPRL	O75663	272 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	GADD45G	O95257	159 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	AHSA1	O95433	338 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CST1	P01037	141 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	THY1	P04216	161 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SHC1	P29353	583 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	RRM2	P31350	389 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	EIF1AX	P47813	144 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CLK1	P49759	484 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	LHX2	P50458	406 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SUCLG1	P53597	346 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CASP6	P55212	293 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TPD52	P55327	224 aa	Predicted RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	DLX5	P56178	289 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CLDN15	P56746	228 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CLDN20	P56880	219 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CARD18	P57730	90 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR2B6	P58173	313 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	CRYZ	Q08257	329 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	C19orf57	Q0VDD7	668 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	IGFBP7	Q16270	282 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	BCL2A1	Q16548	175 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SYT14P1	Q58G82	188 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	NHSL2	Q5HYW2	709 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	DCST1	Q5T197	706 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SWT1	Q5T5J6	900 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	HBM	Q6B0K9	141 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	ZNF730	Q6ZMV8	503 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TSEN54	Q7Z6J9	526 aa	Known RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TSPYL5	Q86VY4	417 aa	Predicted RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	ATCAY	Q86WG3	371 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	LSR	Q86X29	649 aa	Predicted RBP	9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	NKAIN4	Q8IVV8	208 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	PM20D2	Q8IYS1	436 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	OFCC1	Q8IZS5	231 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	ST6GALNAC3	Q8NDV1	305 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	PIK3C3	Q8NEB9	887 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	OR2V1	Q8NHB1	315 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	FAM57A	Q8TBR7	257 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	PYDC1	Q8WXC3	89 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	OSTF1	Q92882	214 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC38A4	Q969I6	547 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SLC25A36	Q96CQ1	311 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	WDYHV1	Q96HA8	205 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	HS6ST2	Q96MM7	605 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	EPYC	Q99645	322 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TAPBPL	Q9BX59	468 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	PRRG4	Q9BZD6	226 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	REEP1	Q9H902	201 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TIGAR	Q9NQ88	270 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	SH3BGRL2	Q9UJC5	107 aa		9.15	□□□□□ -0.94
CPSF7-221	ENST00000543545	TMCC3	Q9ULS5	477 aa		9.15	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms