RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 A8MUA0 341 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 TNFP01375 233 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 CTSEP14091 401 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 ARSBP15848 533 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 PSG6Q00889 435 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 E2F1Q01094 437 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 FZD2Q14332 565 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 MFSD13AQ14CX5 517 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 EOGTQ5NDL2 527 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 MZT2BQ6NZ67 158 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 LYPD4Q6UWN0 246 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 TMEM91Q6ZNR0 172 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 DUSP18Q8NEJ0 188 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 NEIL3Q8TAT5 605 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 CD180Q99467 661 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 NTMQ9P121 344 aa13.63□□□□□ -0.23
DDX55-209ENST00000542286 A0A0J9YY10 115 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 C17orf51A8MQB3 221 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ATP1B1P05026 303 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 PER3P56645 1201 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 RAB25P57735 213 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 UBE2IP63279 158 aaKnown RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 SNTA1Q13424 505 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 CRMP1Q14194 572 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 FAM122CQ6P4D5 195 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ARL9Q6T311 187 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 TEX261Q6UWH6 196 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 SSX6Q7RTT6 188 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 TIGD4Q8IY51 512 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 Q8N402 240 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 SLC44A3Q8N4M1 653 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 SLC37A3Q8NCC5 494 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ZNF559Q9BR84 538 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 CLEC4AQ9UMR7 237 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 EXOSC1Q9Y3B2 195 aaKnown RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 U3KQ87 197 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 SPAG17Q6Q759 2223 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 FREM2Q5SZK8 3169 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 URADA6NGE7 173 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 BHLHE40O14503 412 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 HTR1FP30939 366 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ACVR1BP36896 505 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 NIPAL3Q6P499 406 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 TMEM65Q6PI78 240 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ZNF322Q6U7Q0 402 aaPredicted RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 CDH24Q86UP0 819 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 CDRT4Q8N9R6 151 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ZNF680Q8NEM1 530 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 ZC3HAV1LQ96H79 300 aaKnown RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 HS6ST2Q96MM7 605 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 MAP3K3Q99759 626 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 MRPS18AQ9NVS2 196 aaKnown RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 ELF5Q9UKW6 265 aaPredicted RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 ZNF346Q9UL40 294 aaKnown RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 TMEM184BQ9Y519 407 aaPredicted RBP13.62□□□□□ -0.23
DDX55-209ENST00000542286 LRP4O75096 1905 aa13.62□□□□□ -0.23
DDX55-209ENST00000542286 A0A1B0GWA3 101 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 FABP7O15540 132 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 IL1AP01583 271 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 DBIP07108 87 aaKnown RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 PRKAR1AP10644 381 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 GABRA5P31644 462 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 OR10A3P58181 314 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 FOXK2Q01167 660 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 SLC3A1Q07837 685 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 PRAMEF17Q5VTA0 474 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 RNLSQ5VYX0 342 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 CNIH2Q6PI25 160 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 KLHL36Q8N4N3 616 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ARIH2OSQ8N7S6 290 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 C17orf47Q8NEP4 570 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 GPBAR1Q8TDU6 330 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 KISS1RQ969F8 398 aaPredicted RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 KLHDC3Q9BQ90 382 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ALG8Q9BVK2 526 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 RNF32Q9H0A6 362 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 B3GAT2Q9NPZ5 323 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 LRIT1Q9P2V4 623 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 TNRC18O15417 2968 aaPredicted RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 LYRM1O43325 122 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ORC5O43913 435 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 PLOD3O60568 738 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 SDC3O75056 442 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 FAM157BP0CG42 384 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 BMP7P18075 431 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 PAICSP22234 425 aaKnown RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 ARFIP1P53367 373 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 CTBP2P56545 445 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 CLDN20P56880 219 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 FOXL2P58012 376 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ZNF782Q6ZMW2 699 aaPredicted RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 CLDN22Q8N7P3 220 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 GALNT11Q8NCW6 608 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ZNRF4Q8WWF5 429 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 KIAA1143Q96AT1 154 aaPredicted RBP13.61□□□□□ -0.23
DDX55-209ENST00000542286 ORAI1Q96D31 301 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 MARVELD1Q9BSK0 173 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 ADAM18Q9Y3Q7 739 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 AUP1Q9Y679 476 aa13.61□□□□□ -0.23
DDX55-209ENST00000542286 FAM171A2A8MVW0 826 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms