RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SLC35F4A4IF30 521 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 AP3D1O14617 1153 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 IFNA2P01563 188 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 KRT16P08779 473 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 TFPIP10646 304 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 CCNA2P20248 432 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 MAPK1P28482 360 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 RYKP34925 604 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 FABP6P51161 128 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 PHC1P78364 1004 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 PGS1Q32NB8 556 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 ARHGAP11BQ3KRB8 267 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 LSM12Q3MHD2 195 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 ATP6AP1LQ52LC2 224 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 EMBQ6PCB8 327 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 CLEC2AQ6UVW9 174 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 TMEM108Q6UXF1 575 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 FRRS1Q6ZNA5 592 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 P2RY8Q86VZ1 359 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 ANKRD46Q86W74 232 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 ADGRG3Q86Y34 549 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 APH1AQ96BI3 265 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 ADAD1Q96M93 576 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 HEATR1Q9H583 2144 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 MKS1Q9NXB0 559 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 MALT1Q9UDY8 824 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 POU2F3Q9UKI9 436 aa13.56□□□□□ -0.24
CLSTN3-213ENST00000541953 CCT8L1PA6NM43 557 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 H7C417 338 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 SCN2BO60939 215 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 STX11O75558 287 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 LYPLA1O75608 230 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 DHRS4L1P0CG22 281 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 OR12D1P0DN82 309 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 PGCP20142 388 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 PRPS1L1P21108 318 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 IGFBP5P24593 272 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 RPL3P39023 403 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 PDK3Q15120 406 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 TNFAIP8L2Q6P589 184 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 MOAP1Q96BY2 351 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 PPP1R36Q96LQ0 422 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 MUS81Q96NY9 551 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 KCNK17Q96T54 332 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC7A10Q9NS82 523 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 ATAD3AQ9NVI7 634 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 TAS2R16Q9NYV7 291 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 CHRNA9Q9UGM1 479 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 MID2Q9UJV3 735 aa13.55□□□□□ -0.24
CLSTN3-213ENST00000541953 ZC3H12DA2A288 527 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 ATP6V1G2-DDX39BF2Z307 99 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 PMS2P2O95744 297 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 IMPDH2P12268 514 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 PTAFRP25105 342 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC16A1P53985 500 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 CSNK2A1P68400 391 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 H3F3AP84243 136 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 MST1LQ2TV78 715 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 TSPO2Q5TGU0 170 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 EIF3MQ7L2H7 374 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 C16orf62Q7Z3J2 963 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 FBXL14Q8N1E6 418 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 FAM168AQ92567 244 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 CNOT9Q92600 299 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 TUBGCP3Q96CW5 907 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 INPP5KQ9BT40 448 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 AMBRA1Q9C0C7 1298 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 SERINC1Q9NRX5 453 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 ASB6Q9NWX5 421 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 EMC3Q9P0I2 261 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 CDC42EP3Q9UKI2 254 aa13.54□□□□□ -0.24
CLSTN3-213ENST00000541953 TLDC2A0PJX2 215 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 TMEM72A0PK05 275 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 ITM2AO43736 263 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 F12P00748 615 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC25A16P16260 332 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 CLDN8P56748 225 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 OR2B6P58173 313 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 LGALS3BPQ08380 585 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 RAB35Q15286 201 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 CASP12Q6UXS9 341 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 OR4A15Q8NGL6 344 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 MIPOL1Q8TD10 442 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 TCP10LQ8TDR4 215 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 SLC25A43Q8WUT9 341 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 TMEM234Q8WY98 164 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 RADILQ96JH8 1075 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 SORCS2Q96PQ0 1159 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 SOX7Q9BT81 388 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 MGAT4BQ9UQ53 548 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 FLVCR1Q9Y5Y0 555 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 ATP23Q9Y6H3 246 aa13.53□□□□□ -0.24
CLSTN3-213ENST00000541953 VWC2LB2RUY7 222 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 MRPL33O75394 65 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 APOBEC1P41238 236 aaKnown RBP13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 PDCD2Q16342 344 aaPredicted RBP13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 HIKESHIQ53FT3 197 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 KLHL17Q6TDP4 642 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 GRINAQ7Z429 371 aa13.52□□□□□ -0.25
CLSTN3-213ENST00000541953 ZNF563Q8TA94 476 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms