RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HOXD1Q9GZZ0 328 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 BABAM2Q9NXR7 383 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 A3GALT2U3KPV4 340 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 CACNA1EQ15878 2313 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 ACAA2P42765 397 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 CSNK1EP49674 416 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 SNRPD2P62316 118 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 IFITM2Q01629 132 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 CCINQ13939 588 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 C19orf18Q8NEA5 215 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 MOSPD2Q8NHP6 518 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 TXNDC15Q96J42 360 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 SRA1Q9HD15 236 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 RPS6KB2Q9UBS0 482 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 GNG8Q9UK08 70 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 MMP17Q9ULZ9 603 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 AK6Q9Y3D8 172 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 FAM86C2PA6NEL3 165 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 RIIAD1A6NNX1 92 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 PRAMEF26H0Y7S4 382 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 KCNJ13O60928 360 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 TFP02787 698 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 HLA-DPB1P04440 258 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 SNRPBP14678 240 aaKnown RBP15.55■□□□□ 0.08
USP28-208ENST00000540438 S1PR1P21453 382 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 ETV6P41212 452 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 CD226Q15762 336 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 PRSS45Q7RTY3 260 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 ARIH2OSQ8N7S6 290 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 OR5H6Q8NGV6 325 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 PHOSPHO1Q8TCT1 267 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 GHSRQ92847 366 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 RTN4RQ9BZR6 473 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 MCCC2Q9HCC0 563 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 PRTFDC1Q9NRG1 225 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 DNAJB12Q9NXW2 375 aaKnown RBP15.55■□□□□ 0.08
USP28-208ENST00000540438 TRAV6A0A075B6T7 132 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 HTR3EA5X5Y0 456 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 TVP23AA6NH52 213 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 EIF4EP06730 217 aaKnown RBP15.55■□□□□ 0.08
USP28-208ENST00000540438 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.55■□□□□ 0.08
USP28-208ENST00000540438 GPR50Q13585 617 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 EIPR1Q53HC9 387 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 VWA2Q5GFL6 755 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 OR8K3Q8NH51 312 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 HSD17B8Q92506 261 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 ZNF576Q9H609 170 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 ZNF221Q9UK13 617 aa15.55■□□□□ 0.08
USP28-208ENST00000540438 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 IGHV3-20A0A0C4DH32 117 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 B4DXG7 233 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 PLGP00747 810 aaPredicted RBP15.54■□□□□ 0.08
USP28-208ENST00000540438 HMGN1P05114 100 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ZNF85Q03923 595 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 APOOLQ6UXV4 268 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 UBQLNLQ8IYU4 475 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ZNF433Q8N7K0 673 aaPredicted RBP15.54■□□□□ 0.08
USP28-208ENST00000540438 TMCO6Q96DC7 493 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 DGAT2Q96PD7 388 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ADOQ96SZ5 270 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 DUSP22Q9NRW4 184 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 PAQR5Q9NXK6 330 aaPredicted RBP15.54■□□□□ 0.08
USP28-208ENST00000540438 IQCMA0A1B0GVH7 501 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 EEF1E1O43324 174 aaKnown RBP15.54■□□□□ 0.08
USP28-208ENST00000540438 NUDT14O95848 222 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 TFPIP10646 304 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ZNHIT3Q15649 155 aaPredicted RBP15.54■□□□□ 0.08
USP28-208ENST00000540438 C1QL3Q5VWW1 255 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 OR6F1Q8NGZ6 308 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ITFG2Q969R8 447 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 THADAQ6YHU6 1953 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 CD3GP09693 182 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 MYL9P24844 172 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 AQP2P41181 271 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 RABIFP47224 123 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 FAM69BQ5VUD6 431 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 GDPGP1Q6ZNW5 385 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 OR4M1Q8NGD0 313 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 FAM131CQ96AQ9 280 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 Q96M85 177 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 OR14A2Q96R54 314 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 GAL3ST1Q99999 423 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 POT1Q9NUX5 634 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 ACOXLQ9NUZ1 547 aa15.54■□□□□ 0.08
USP28-208ENST00000540438 FAM240BA0A1B0GVZ2 78 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 ACOD1A6NK06 481 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 SBK2P0C263 348 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 CT45A8P0DMV1 189 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 CT45A9P0DMV2 189 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 HPGDP15428 266 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 HOXD12P35452 270 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 SMAD2Q15796 467 aaKnown RBP15.53■□□□□ 0.08
USP28-208ENST00000540438 CT45A2Q5DJT8 189 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 TMEM184AQ6ZMB5 413 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 MRGPREQ86SM8 312 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 SMRP1Q8NCR6 262 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 PMEPA1Q969W9 287 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 DACT3Q96B18 629 aaPredicted RBP15.53■□□□□ 0.08
USP28-208ENST00000540438 MSLNLQ96KJ4 702 aa15.53■□□□□ 0.08
USP28-208ENST00000540438 MOGAT1Q96PD6 335 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms