RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ASB6Q9NWX5 421 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 POU2F3Q9UKI9 436 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 HDGFL3Q9Y3E1 203 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 SPIN1Q9Y657 262 aaPredicted RBP11.93□□□□□ -0.5
SS18-204ENST00000539244 MALRD1Q5VYJ5 2156 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.93□□□□□ -0.51e-7■■■■□ 26.1
SS18-204ENST00000539244 ANKRD28O15084 1053 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 CFLARO15519 480 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 KIAA0513O60268 411 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 IGHV3-9P01782 118 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 ITGA5P08648 1049 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 UBTFL6P0CB48 400 aaPredicted RBP11.92□□□□□ -0.5
SS18-204ENST00000539244 MATN1P21941 496 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 ALDH3A1P30838 453 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 SERPINB5P36952 375 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 CLK1P49759 484 aaKnown RBP11.92□□□□□ -0.5
SS18-204ENST00000539244 ZNF83P51522 516 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 RPS26P62854 115 aaKnown RBP11.92□□□□□ -0.5
SS18-204ENST00000539244 H3F3AP84243 136 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 CYB5R2Q6BCY4 276 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 C6orf120Q7Z4R8 191 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 GSPT2Q8IYD1 628 aaKnown RBP11.92□□□□□ -0.5
SS18-204ENST00000539244 DEPDC4Q8N2C3 294 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 UBE2J2Q8N2K1 259 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 FNDC5Q8NAU1 212 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 EPS8L3Q8TE67 593 aaKnown RBP11.92□□□□□ -0.5
SS18-204ENST00000539244 APOPT1Q96IL0 206 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 KCNK17Q96T54 332 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 C1orf50Q9BV19 199 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 BEX2Q9BXY8 128 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 SAP130Q9H0E3 1048 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 CHRNA9Q9UGM1 479 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 MKLN1Q9UL63 735 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 SLC35A3Q9Y2D2 325 aa11.92□□□□□ -0.5
SS18-204ENST00000539244 CCT8L1PA6NM43 557 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 CYP7B1O75881 506 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 SLU7O95391 586 aaKnown RBP11.91□□□□□ -0.5
SS18-204ENST00000539244 IGHV4-31P0DP07 118 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 BMP4P12644 408 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 ARRB2P32121 409 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 SOAT1P35610 550 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 FABP6P51161 128 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 EFNA4P52798 201 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 FOXG1P55316 489 aaPredicted RBP11.91□□□□□ -0.5
SS18-204ENST00000539244 CHRNEQ04844 493 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 MAPK14Q16539 360 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 GRINAQ7Z429 371 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 C17orf78Q8N4C9 275 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 WDR31Q8NA23 367 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 C1orf162Q8NEQ5 155 aaPredicted RBP11.91□□□□□ -0.5
SS18-204ENST00000539244 UBLCP1Q8WVY7 318 aaPredicted RBP11.91□□□□□ -0.5
SS18-204ENST00000539244 ARL5BQ96KC2 179 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 RHOXF2Q9BQY4 288 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 MECRQ9BV79 373 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 EXOSC3Q9NQT5 275 aaKnown RBP11.91□□□□□ -0.5
SS18-204ENST00000539244 CTPS2Q9NRF8 586 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 POLE3Q9NRF9 147 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 EXD2Q9NVH0 621 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 ASIC5Q9NY37 505 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 DCTN4Q9UJW0 460 aa11.91□□□□□ -0.5
SS18-204ENST00000539244 RNF103-CHMP3A0A140T963 221 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 A0A1W2PR80 420 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 SMIM23A6NLE4 172 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 M0R1B8 84 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 RNASET2O00584 256 aaKnown RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 BCAS1O75363 584 aaPredicted RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 MRPL33O75394 65 aaKnown RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 AGR2O95994 175 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 TFPIP10646 304 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 G6PDP11413 515 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 USF1P22415 310 aaPredicted RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 APOBEC3AP31941 199 aaPredicted RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 CLDN8P56748 225 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 CHRNB3Q05901 458 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 MAD2L1Q13257 205 aaPredicted RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 KRTAP24-1Q3LI83 254 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 TYW3Q6IPR3 259 aaKnown RBP11.9□□□□□ -0.5
SS18-204ENST00000539244 EMBQ6PCB8 327 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 C16orf62Q7Z3J2 963 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 ADGRG3Q86Y34 549 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 CLECL1Q8IZS7 167 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 HTRA1Q92743 480 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 BOD1Q96IK1 185 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 SLC35G5Q96KT7 338 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 SHARPINQ9H0F6 387 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 MANSC1Q9H8J5 431 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 FKRPQ9H9S5 495 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 ZDHHC2Q9UIJ5 367 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 TRAPPC4Q9Y296 219 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 AMDHD2Q9Y303 409 aa11.9□□□□□ -0.5
SS18-204ENST00000539244 VWC2LB2RUY7 222 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 LMX1BO60663 402 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 ZNF16P17020 682 aaPredicted RBP11.89□□□□□ -0.51
SS18-204ENST00000539244 MAGEA8P43361 318 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 GZMKP49863 264 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 LSM11P83369 360 aaKnown RBP eCLIP11.89□□□□□ -0.51
SS18-204ENST00000539244 PLAURQ03405 335 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 EMX2Q04743 252 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 FUT5Q11128 374 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 SMU1Q2TAY7 513 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms