RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SULT2B1O00204 365 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 CYTIPO60759 359 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 HNRNPCL1O60812 293 aaKnown RBP13.16□□□□□ -0.3
USP28-204ENST00000537642 FESP07332 822 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 YES1P07947 543 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 GKN3PP0CG01 181 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 HNRNPCL4P0DMR1 293 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 TFPIP10646 304 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 NCF2P19878 526 aaPredicted RBP13.16□□□□□ -0.3
USP28-204ENST00000537642 CRYGSP22914 178 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 HTR3AP46098 478 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 RNF220Q5VTB9 566 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 TFAP2EQ6VUC0 442 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 BEND4Q6ZU67 534 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 STK32CQ86UX6 486 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 ZNF440Q8IYI8 595 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 NINJ1Q92982 152 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 DNAJA3Q96EY1 480 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 BCO1Q9HAY6 547 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 BCL2L10Q9HD36 194 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 CCM2LQ9NUG4 571 aaPredicted RBP13.16□□□□□ -0.3
USP28-204ENST00000537642 KLHL9Q9P2J3 617 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 OSGIN1Q9UJX0 560 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 PLEKHA6Q9Y2H5 1048 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 TMED7Q9Y3B3 224 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 GMEB1Q9Y692 573 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 CELSR1Q9NYQ6 3014 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 PRRC2AP48634 2157 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 A0A1W2PP18 115 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 TMEM72A0PK05 275 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 PMS2P2O95744 297 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 THBS1P07996 1170 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 CCNA2P20248 432 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 TACR3P29371 465 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 ACAA2P42765 397 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 SLC1A3P43003 542 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 POLR2HP52434 150 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 CSNK2A1P68400 391 aaPredicted RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 RASGEF1BQ0VAM2 473 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 LARS2Q15031 903 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 PRAMEF8Q5VWM4 474 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 PRAMEF7Q5VXH5 474 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 ABLIM2Q6H8Q1 611 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 CLIP4Q8N3C7 705 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 ZC3HAV1LQ96H79 300 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 ZNF300Q96RE9 604 aaPredicted RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 TACO1Q9BSH4 297 aaKnown RBP13.15□□□□□ -0.3
USP28-204ENST00000537642 ADAM19Q9H013 955 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 RABEP2Q9H5N1 569 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 IKZF5Q9H5V7 419 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 ZNF226Q9NYT6 803 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 HDGFL3Q9Y3E1 203 aa13.15□□□□□ -0.3
USP28-204ENST00000537642 A0A0G2JND7 137 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 GCM2O75603 506 aaPredicted RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 THBDP07204 575 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 ARAFP10398 606 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 PRG2P13727 222 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 PSMB1P20618 241 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 PPIBP23284 216 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 FKBP2P26885 142 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 CLK1P49759 484 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 ART1P52961 327 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 GCNT6Q5T4J0 391 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 PAMR1Q6UXH9 720 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 DLEU7Q6UYE1 221 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 SPNS3Q6ZMD2 512 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 MTDHQ86UE4 582 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 GABRG1Q8N1C3 465 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 NFKBIDQ8NI38 313 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 BBS10Q8TAM1 723 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 ZNF775Q96BV0 537 aaPredicted RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 SIKE1Q9BRV8 207 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 SPATA9Q9BWV2 254 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 RSPO3Q9BXY4 272 aaPredicted RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 ZNF232Q9UNY5 417 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 TRIM33Q9UPN9 1127 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 IFT52Q9Y366 437 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 MED13LQ71F56 2210 aa13.14□□□□□ -0.31
USP28-204ENST00000537642 TEP1Q99973 2627 aaKnown RBP13.14□□□□□ -0.31
USP28-204ENST00000537642 ZNF469Q96JG9 3925 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 ZC3H12DA2A288 527 aaKnown RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 ZNF724A8MTY0 619 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ZNF814B7Z6K7 855 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ZNF208O43345 1280 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 PGM3O95394 542 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 IMPDH2P12268 514 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 UQCRBP14927 111 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 PPP3CBP16298 524 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 GPX2P18283 190 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 DNASE1P24855 282 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 EDNRAP25101 427 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 LOXP28300 417 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 OR2B6P58173 313 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ZSWIM7Q19AV6 140 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ZNF311Q5JNZ3 666 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 SERPINA11Q86U17 422 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 RETREG3Q86VR2 466 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 CXorf67Q86X51 503 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 DDIT4LQ96D03 193 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 PIK3IP1Q96FE7 263 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms