RNA–Protein interactions for RNA: ENST00000535958.1

TNFRSF1A-207, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 4

Gene TNFRSF1A, Length 568 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-207ENST00000535958 LSM11P83369 360 aaKnown RBP eCLIP11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 TGFBR3Q03167 851 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 GGTLC2Q14390 218 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PCLAFQ15004 111 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 CARTPTQ16568 116 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C4orf33Q8N1A6 199 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PSMA8Q8TAA3 256 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C10orf105Q8TEF2 133 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 ZNF75CPQ92670 426 aaPredicted RBP11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SDF2Q99470 211 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 KCNS3Q9BQ31 491 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 DUSP26Q9BV47 211 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C1QTNF6Q9BXI9 259 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C12orf65Q9H3J6 166 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 ACER3Q9NUN7 267 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 MALT1Q9UDY8 824 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 MKLN1Q9UL63 735 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PCDHGB4Q9UN71 923 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SLC35A3Q9Y2D2 325 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 AMDHD2Q9Y303 409 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 HDGFL3Q9Y3E1 203 aa11.41□□□□□ -0.58
TNFRSF1A-207ENST00000535958 A0A096LNT2 108 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 DNPH1O43598 174 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 NPHS1O60500 1241 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SKAP2O75563 359 aaPredicted RBP11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SLU7O95391 586 aaKnown RBP11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PMS2P2O95744 297 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 AGR2O95994 175 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 WNT11O96014 354 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 CHRNGP07510 517 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 FAM153BP0C7A2 387 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 IGHV4-31P0DP07 118 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 APOBEC3AP31941 199 aaPredicted RBP11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 RYKP34925 604 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 OR2B6P58173 313 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SNRPD2P62316 118 aaKnown RBP11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PHC1P78364 1004 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 MAD2L1Q13257 205 aaPredicted RBP11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 ZNF141Q15928 474 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PGS1Q32NB8 556 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 KRTAP24-1Q3LI83 254 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C9orf135Q5VTT2 229 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 IL23RQ5VWK5 629 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 B3GLCTQ6Y288 498 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 GRINAQ7Z429 371 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C17orf78Q8N4C9 275 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C3orf49Q96BT1 292 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 DNAJA3Q96EY1 480 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 RHOXF2Q9BQY4 288 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 C19orf24Q9BVV8 132 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 CTPS2Q9NRF8 586 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 PARPBPQ9NWS1 579 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 GIMAP2Q9UG22 337 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 SLC9A8Q9Y2E8 581 aa11.4□□□□□ -0.58
TNFRSF1A-207ENST00000535958 LOC100289279A0A1B0GTE1 492 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ZNF716A6NP11 495 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ESPNB1AK53 854 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 NDUFS8O00217 210 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 UGT2B17O75795 530 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 FGF4P08620 206 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 APEHP13798 732 aaKnown RBP11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 UQCRBP14927 111 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 HBA1P69905 142 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 GABRA6Q16445 453 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ARHGAP11BQ3KRB8 267 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 C6orf120Q7Z4R8 191 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ALPK2Q86TB3 2170 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 KRTCAP2Q8N6L1 136 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 C1orf162Q8NEQ5 155 aaPredicted RBP11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 OR52E4Q8NGH9 312 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 OIT3Q8WWZ8 545 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 TUBGCP3Q96CW5 907 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 DDIT4LQ96D03 193 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 FBXO17Q96EF6 278 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 NAA11Q9BSU3 229 aaPredicted RBP11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 WDR45Q9Y484 360 aa11.39□□□□□ -0.59
TNFRSF1A-207ENST00000535958 KIAA0513O60268 411 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 EIF1BO60739 113 aaKnown RBP11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 KRT33AO76009 404 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 SHBGP04278 402 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 CCNA2P20248 432 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 IGFBP5P24593 272 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 THBS2P35442 1172 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 HTR3AP46098 478 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 CLK1P49759 484 aaKnown RBP11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 SLC16A1P53985 500 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 IQCCQ4KMZ1 466 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 XKR7Q5GH72 579 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 C6orf136Q5SQH8 315 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 LIPNQ5VXI9 398 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 SLC46A3Q7Z3Q1 461 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ABHD12BQ7Z5M8 362 aaPredicted RBP11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 GSPT2Q8IYD1 628 aaKnown RBP11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ARFGAP2Q8N6H7 521 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 OR4A15Q8NGL6 344 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 EPS8L3Q8TE67 593 aaKnown RBP11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 ZNF524Q96C55 264 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 COQ8BQ96D53 544 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 APOPT1Q96IL0 206 aa11.38□□□□□ -0.59
TNFRSF1A-207ENST00000535958 MUS81Q96NY9 551 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms