RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 SOSTQ9BQB4 213 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 YIPF2Q9BWQ6 316 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 CHRNA10Q9GZZ6 450 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 C11orf54Q9H0W9 315 aaPredicted RBP12.29□□□□□ -0.44
VPS33B-202ENST00000535906 OR51V1Q9H2C8 321 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 COMMD3Q9UBI1 195 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 UNC13CQ8NB66 2214 aa12.29□□□□□ -0.44
VPS33B-202ENST00000535906 SERINC4A6NH21 518 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 OR2B3O76000 313 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 GALP22466 123 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CFHR1Q03591 330 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CRMP1Q14194 572 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 RTL4Q6ZR62 310 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 PRR23CQ6ZRP0 262 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 MARCH9Q86YJ5 346 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 RDH10Q8IZV5 341 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 SIX5Q8N196 739 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 ATP6V1C2Q8NEY4 427 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 OR4C6Q8NH72 309 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 NEIL3Q8TAT5 605 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 AHCYL2Q96HN2 611 aaKnown RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 ATF6BQ99941 703 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 PNO1Q9NRX1 252 aaKnown RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CUTCQ9NTM9 273 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 DHCR7Q9UBM7 475 aaKnown RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 SLC35A3Q9Y2D2 325 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CABIN1Q9Y6J0 2220 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CCDC182A6NF36 153 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 TMEM150CB9EJG8 249 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 LRRN3E7EW58 273 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 TRAPPC2P0DI81 140 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 TRAPPC2BP0DI82 140 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CFL1P23528 166 aaKnown RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 DDOSTP39656 456 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 SLC16A1P53985 500 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 EPHA4P54764 986 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 IFITM2Q01629 132 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 BDH1Q02338 343 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 SERTAD2Q14140 314 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 SF3B4Q15427 424 aaKnown RBP eCLIP12.28□□□□□ -0.441e-6■■■■□ 21.3
VPS33B-202ENST00000535906 PTCRAQ6ISU1 281 aaPredicted RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 METAP1DQ6UB28 335 aaPredicted RBP12.28□□□□□ -0.44
VPS33B-202ENST00000535906 LRRC17Q8N6Y2 441 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 CAPSLQ8WWF8 208 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 ART5Q96L15 291 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 ALG8Q9BVK2 526 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 MMP28Q9H239 520 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 LRRN3Q9H3W5 708 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 RPS6KB2Q9UBS0 482 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 N6AMT1Q9Y5N5 214 aa12.28□□□□□ -0.44
VPS33B-202ENST00000535906 IGHV1OR21-1A0A087WYE8 117 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SHISA3A0PJX4 238 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 A8MUA0 341 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 TFECO14948 347 aaPredicted RBP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 HLA-DQB1P01920 261 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 GYPBP06028 91 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 PEPDP12955 493 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 MYF5P13349 255 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SLC2A5P22732 501 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 PSMD4P55036 377 aaKnown RBP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SLC37A1P57057 533 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 RPS7P62081 194 aaKnown RBP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 KLHL26Q53HC5 615 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SNAP47Q5SQN1 464 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 CNIH2Q6PI25 160 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 MED25Q71SY5 747 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 CMIPQ8IY22 773 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SDR16C5Q8N3Y7 309 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 GATSQ8NAP1 163 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SMAP2Q8WU79 429 aaPredicted RBP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 ST6GAL2Q96JF0 529 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 DEPDC7Q96QD5 511 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 OR2B2Q9GZK3 357 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 PPP1R3EQ9H7J1 279 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 PRODH2Q9UF12 536 aa12.27□□□□□ -0.44
VPS33B-202ENST00000535906 SIRT4Q9Y6E7 314 aaPredicted RBP12.27□□□□□ -0.44
VPS33B-202ENST00000535906 EML5Q05BV3 1969 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 TP53BP1Q12888 1972 aaPredicted RBP12.27□□□□□ -0.45
VPS33B-202ENST00000535906 HMX3A6NHT5 357 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 SLC22A31A6NKX4 558 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 RIIAD1A6NNX1 92 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 EFCAB7A8K855 629 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 PLA2G10O15496 165 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 HPGDSO60760 199 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 MRPL3P09001 348 aaKnown RBP12.27□□□□□ -0.45
VPS33B-202ENST00000535906 PTBP1P26599 531 aaKnown RBP eCLIP12.27□□□□□ -0.45
VPS33B-202ENST00000535906 GALNSP34059 522 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 LCN1P1Q5VSP4 162 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 SPEM1Q8N4L4 309 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 Q8N9G6 341 aaPredicted RBP12.27□□□□□ -0.45
VPS33B-202ENST00000535906 OR10H4Q8NGA5 316 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 TSLPQ969D9 159 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 TP63Q9H3D4 680 aaPredicted RBP12.27□□□□□ -0.45
VPS33B-202ENST00000535906 SYNDIG1Q9H7V2 258 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 WNT16Q9UBV4 365 aa12.27□□□□□ -0.45
VPS33B-202ENST00000535906 A0A087WUJ7 227 aa12.26□□□□□ -0.45
VPS33B-202ENST00000535906 DAPL1A0PJW8 107 aa12.26□□□□□ -0.45
VPS33B-202ENST00000535906 CD8B2A6NJW9 211 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms