RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SSU72Q9NP77 194 aaKnown RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 CTPS2Q9NRF8 586 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 CHRNA9Q9UGM1 479 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 GDF2Q9UK05 429 aaPredicted RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 WDR45Q9Y484 360 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 SPIN1Q9Y657 262 aaPredicted RBP10.01□□□□□ -0.81
VPS28-214ENST00000531032 PLCE1Q9P212 2302 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 MXRA5Q9NR99 2828 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 RTTNQ86VV8 2226 aa10.01□□□□□ -0.81
VPS28-214ENST00000531032 PRSS51A0A1B0GVH4 220 aa10□□□□□ -0.81
VPS28-214ENST00000531032 GPR171O14626 319 aa10□□□□□ -0.81
VPS28-214ENST00000531032 ITM2AO43736 263 aa10□□□□□ -0.81
VPS28-214ENST00000531032 RAD51DO75771 328 aa10□□□□□ -0.81
VPS28-214ENST00000531032 IGHV3-9P01782 118 aa10□□□□□ -0.81
VPS28-214ENST00000531032 TP53P04637 393 aaPredicted RBP10□□□□□ -0.81
VPS28-214ENST00000531032 OR12D1P0DN82 309 aa10□□□□□ -0.81
VPS28-214ENST00000531032 UQCRC2P22695 453 aa10□□□□□ -0.81
VPS28-214ENST00000531032 FKBP2P26885 142 aaKnown RBP10□□□□□ -0.81
VPS28-214ENST00000531032 CLK1P49759 484 aaKnown RBP10□□□□□ -0.81
VPS28-214ENST00000531032 SLC16A1P53985 500 aa10□□□□□ -0.81
VPS28-214ENST00000531032 CASP9P55211 416 aa10□□□□□ -0.81
VPS28-214ENST00000531032 PHC1P78364 1004 aa10□□□□□ -0.81
VPS28-214ENST00000531032 PLAURQ03405 335 aa10□□□□□ -0.81
VPS28-214ENST00000531032 HHATQ5VTY9 493 aa10□□□□□ -0.81
VPS28-214ENST00000531032 AGAP6Q5VW22 663 aa10□□□□□ -0.81
VPS28-214ENST00000531032 SAXO2Q658L1 398 aa10□□□□□ -0.81
VPS28-214ENST00000531032 C11orf71Q6IPW1 123 aa10□□□□□ -0.81
VPS28-214ENST00000531032 TNFAIP8L2Q6P589 184 aaPredicted RBP10□□□□□ -0.81
VPS28-214ENST00000531032 TMEM108Q6UXF1 575 aa10□□□□□ -0.81
VPS28-214ENST00000531032 FRRS1Q6ZNA5 592 aa10□□□□□ -0.81
VPS28-214ENST00000531032 GRINAQ7Z429 371 aa10□□□□□ -0.81
VPS28-214ENST00000531032 KIRREL3Q8IZU9 778 aa10□□□□□ -0.81
VPS28-214ENST00000531032 ZNF563Q8TA94 476 aa10□□□□□ -0.81
VPS28-214ENST00000531032 PIGXQ8TBF5 258 aa10□□□□□ -0.81
VPS28-214ENST00000531032 APH1AQ96BI3 265 aa10□□□□□ -0.81
VPS28-214ENST00000531032 TESCQ96BS2 214 aa10□□□□□ -0.81
VPS28-214ENST00000531032 ROPN1LQ96C74 230 aa10□□□□□ -0.81
VPS28-214ENST00000531032 ZHX1-C8orf76Q96EF9 292 aa10□□□□□ -0.81
VPS28-214ENST00000531032 NEURL3Q96EH8 262 aa10□□□□□ -0.81
VPS28-214ENST00000531032 ARL5BQ96KC2 179 aa10□□□□□ -0.81
VPS28-214ENST00000531032 PPP1R36Q96LQ0 422 aa10□□□□□ -0.81
VPS28-214ENST00000531032 DPY30Q9C005 99 aa10□□□□□ -0.81
VPS28-214ENST00000531032 AKTIPQ9H8T0 292 aa10□□□□□ -0.81
VPS28-214ENST00000531032 EXOSC3Q9NQT5 275 aaKnown RBP10□□□□□ -0.81
VPS28-214ENST00000531032 MALT1Q9UDY8 824 aa10□□□□□ -0.81
VPS28-214ENST00000531032 PCDHGB4Q9UN71 923 aa10□□□□□ -0.81
VPS28-214ENST00000531032 MGAT4BQ9UQ53 548 aa10□□□□□ -0.81
VPS28-214ENST00000531032 B3GALT5Q9Y2C3 310 aa10□□□□□ -0.81
VPS28-214ENST00000531032 NOSIPQ9Y314 301 aaKnown RBP10□□□□□ -0.81
VPS28-214ENST00000531032 HDGFL3Q9Y3E1 203 aa10□□□□□ -0.81
VPS28-214ENST00000531032 SLC25A15Q9Y619 301 aa10□□□□□ -0.81
VPS28-214ENST00000531032 CUBNO60494 3623 aa10□□□□□ -0.81
VPS28-214ENST00000531032 A0A096LNT2 108 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 PRAMEF27A3QJZ7 478 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 E7EQL1 145 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 BIRC5O15392 142 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 TFPIP10646 304 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 PTAFRP25105 342 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 TTKP33981 857 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 NTF4P34130 210 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 RYKP34925 604 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 KHKP50053 298 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ABCE1P61221 599 aaKnown RBP9.99□□□□□ -0.81
VPS28-214ENST00000531032 KCNJ10P78508 379 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 H3F3AP84243 136 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 CASP8Q14790 479 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ANXA8L1Q5VT79 327 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ANKRD46Q86W74 232 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ADGRG3Q86Y34 549 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 HIPK1Q86Z02 1210 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 UBE2J2Q8N2K1 259 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ZNF781Q8N8C0 355 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 OR52N5Q8NH56 324 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 XAGE5Q8WWM1 108 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 RAB8BQ92930 207 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ZG16BQ96DA0 208 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 DHRS9Q9BPW9 319 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 OR11A1Q9GZK7 315 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 C20orf27Q9GZN8 174 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ASB6Q9NWX5 421 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 TAS2R16Q9NYV7 291 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 ANK3Q12955 4377 aaKnown RBP9.99□□□□□ -0.81
VPS28-214ENST00000531032 STAB1Q9NY15 2570 aa9.99□□□□□ -0.81
VPS28-214ENST00000531032 CIB4A0PJX0 185 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CCT8L1PA6NM43 557 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CLDN24A6NM45 220 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 PDLIM1O00151 329 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 SSX4O60224 188 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 MRPL33O75394 65 aaKnown RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 SNUPNO95149 360 aaKnown RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 ITGA5P08648 1049 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 DHRS4L1P0CG22 281 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 PTNP21246 168 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 BGNP21810 368 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 CD40P25942 277 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 SLC1A6P48664 564 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 ZNF83P51522 516 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 NUDT6P53370 316 aa9.98□□□□□ -0.81
VPS28-214ENST00000531032 IRX1P78414 480 aaPredicted RBP9.98□□□□□ -0.81
VPS28-214ENST00000531032 HPCAP84074 193 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms