RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 RNF139Q8WU17 664 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 EFHD2Q96C19 240 aaPredicted RBP3.24□□□□□ -1.89
CD44-223ENST00000526553 RBM14Q96PK6 669 aaKnown RBP3.24□□□□□ -1.89
CD44-223ENST00000526553 KIR2DL4Q99706 377 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 CITED1Q99966 193 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 CCDC77Q9BR77 488 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 NIPSNAP3BQ9BS92 247 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 MAGT1Q9H0U3 335 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 NXF5Q9H1B4 397 aaKnown RBP3.24□□□□□ -1.89
CD44-223ENST00000526553 SMYD3Q9H7B4 428 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 VPS37BQ9H9H4 285 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 TMEM9Q9P0T7 183 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 KLHL21Q9UJP4 597 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 MAGI3Q5TCQ9 1506 aa3.24□□□□□ -1.89
CD44-223ENST00000526553 HELTA6NFD8 242 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 FAM47DPA6NHR8 397 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 F5H6K3 240 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 G3V4G9 280 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 CIB2O75838 187 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SLC2A10O95528 541 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SLC2A3P11169 496 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 ELK1P19419 428 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SERPINA2P20848 420 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 MMP11P24347 488 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 NMT1P30419 496 aaKnown RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 GDI1P31150 447 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 YWHABP31946 246 aaKnown RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 CD80P33681 288 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 TAGLN2P37802 199 aaKnown RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 HNRNPA3P51991 378 aaKnown RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 EFNB2P52799 333 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 VLDLRP98155 873 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 KLRC3Q07444 240 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 KCNJ11Q14654 390 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SLC15A2Q16348 729 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 KCTD21Q4G0X4 260 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 LCE3AQ5TA76 89 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 TPRA1Q86W33 373 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 TGIF2LXQ8IUE1 241 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 UBE2J2Q8N2K1 259 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 OR8J1Q8NGP2 316 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 ZNF564Q8TBZ8 553 aaPredicted RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 MAIP1Q8WWC4 291 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 MRPS31Q92665 395 aaKnown RBP3.23□□□□□ -1.89
CD44-223ENST00000526553 MAGEB18Q96M61 343 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 GLT8D2Q9H1C3 349 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 ZNF385DQ9H6B1 395 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 MCCC2Q9HCC0 563 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 FANCFQ9NPI8 374 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 NANSQ9NR45 359 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SLC17A5Q9NRA2 495 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SEC14L3Q9UDX4 400 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 SCML2Q9UQR0 700 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 CA5BQ9Y2D0 317 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 CTTNBP2Q8WZ74 1663 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 DISP1Q96F81 1524 aa3.23□□□□□ -1.89
CD44-223ENST00000526553 KIAA0556O60303 1618 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 CTAGE15A4D2H0 777 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 LRP5LA4QPB2 252 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 SAGE2PA6NJ88 616 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 ZFP92A6NM28 416 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 SNTNA6NMZ2 147 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 PP2D1A8MPX8 630 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 E9PLD3 99 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 RS1O15537 224 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 TSPAN12O95859 305 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 PGK1P00558 417 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 CA1P00915 261 aaPredicted RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 ALPIP09923 528 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 CYP2B6P20813 491 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 IDSP22304 550 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 IL2RGP31785 369 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 NF2P35240 595 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 RPL13AP40429 203 aaKnown RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 CASP4P49662 377 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 RIPPLY3P57055 190 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 SERTAD2Q14140 314 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 DPYSL3Q14195 570 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 IMMTQ16891 758 aaKnown RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 FAM120AOSQ5T036 256 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 ZNF57Q68EA5 555 aaPredicted RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 OR4F3Q6IEY1 312 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 Q6ZVH6 145 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 UTS2BQ765I0 119 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 CTAGE6Q86UF2 777 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 MTURNQ8N3F0 131 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 CSNK1A1LQ8N752 337 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 FAM83FQ8NEG4 500 aaPredicted RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 TRUB1Q8WWH5 349 aaKnown RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 SLC35A5Q9BS91 424 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 C19orf24Q9BVV8 132 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 GON7Q9BXV9 100 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 ELOVL4Q9GZR5 314 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 NAT10Q9H0A0 1025 aaKnown RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 RAB18Q9NP72 206 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 PNO1Q9NRX1 252 aaKnown RBP3.22□□□□□ -1.89
CD44-223ENST00000526553 IL36GQ9NZH8 169 aa3.22□□□□□ -1.89
CD44-223ENST00000526553 APOBEC3BQ9UH17 382 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms