RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 C10orf90Q96M02 699 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 FRMD6Q96NE9 622 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 COMMD4Q9H0A8 199 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 SYNPO2LQ9H987 977 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ISG20L2Q9H9L3 353 aaKnown RBP9.37□□□□□ -0.91
MCF2-209ENST00000520602 BEX1Q9HBH7 125 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 TMEM165Q9HC07 324 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 TEX13CA0A0J9YWL9 993 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 METTL12A8MUP2 240 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ZNF264O43296 627 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 SSNA1O43805 119 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 NSA2O95478 260 aaKnown RBP9.37□□□□□ -0.91
MCF2-209ENST00000520602 DHFRP00374 187 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 FOSL2P15408 326 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ZNF823P16415 610 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 GABRB1P18505 474 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 LTBRP36941 435 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 LIMS1P48059 325 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 GAS6Q14393 721 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 INSL4Q14641 139 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 HSD17B12Q53GQ0 312 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 MTFR2Q6P444 385 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ZNF322Q6U7Q0 402 aaPredicted RBP9.37□□□□□ -0.91
MCF2-209ENST00000520602 KIRREL2Q6UWL6 708 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 MFSD4AQ8N468 514 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 BCORP1Q8N888 145 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 C1orf216Q8TAB5 229 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 RASD2Q96D21 266 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ELF4Q99607 663 aaPredicted RBP9.37□□□□□ -0.91
MCF2-209ENST00000520602 HOXD1Q9GZZ0 328 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 PMF1-BGLAPU3KQ54 211 aa9.37□□□□□ -0.91
MCF2-209ENST00000520602 ZNF879B4DU55 563 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ORC5O43913 435 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 RAD1O60671 282 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 OPN1LWP04000 364 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SPARCP09486 303 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 BLVRAP53004 296 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 HSD17B7P56937 341 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 LPAL2Q16609 132 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 CEP78Q5JTW2 689 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 PAMR1Q6UXH9 720 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SLC35F2Q8IXU6 374 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ZNF511Q8NB15 262 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ATXN7L1Q9ULK2 861 aaPredicted RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 RASD1Q9Y272 281 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 PLXNA4Q9HCM2 1894 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 TRAV6A0A075B6T7 132 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 IGHV1OR15-9A0A0B4J2B8 117 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 C2orf72A6NCS6 295 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 CYR61O00622 381 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 EIF1AYO14602 144 aaKnown RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 TNFSF14O43557 240 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 FMO6PO60774 539 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 UTS2O95399 124 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 CBX7O95931 251 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 GLULP15104 373 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 PGCP20142 388 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 RAB3BP20337 219 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 TACR3P29371 465 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 MAP2K3P46734 347 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 AFF3P51826 1226 aaKnown RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 POU4F2Q12837 409 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SMAD4Q13485 552 aaKnown RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 CCINQ13939 588 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 TBRG1Q3YBR2 411 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ZMAT1Q5H9K5 638 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 MS4A15Q8N5U1 240 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 GHSRQ92847 366 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 MSLNLQ96KJ4 702 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 Q96M85 177 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 METTL7AQ9H8H3 244 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SP140LQ9H930 580 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 UCKL1Q9NWZ5 548 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SATB2Q9UPW6 733 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 VDAC3Q9Y277 283 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ZNF749O43361 778 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 MBTPS2O43462 519 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 CPEP16870 476 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 HTR2AP28223 471 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 CD79BP40259 229 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 GDI2P50395 445 aaKnown RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 ANGPT1Q15389 498 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 WBP2NLQ6ICG8 309 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 XKRXQ6PP77 449 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 TSSK4Q6SA08 328 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 THSD4Q6ZMP0 1018 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 LINC00299Q6ZSB3 139 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 NXF5Q9H1B4 397 aaKnown RBP9.36□□□□□ -0.91
MCF2-209ENST00000520602 FBXL4Q9UKA2 621 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 ZNF337Q9Y3M9 751 aa9.36□□□□□ -0.91
MCF2-209ENST00000520602 SCN8AQ9UQD0 1980 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 A0A075B6Q4 140 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 ITGA10O75578 1167 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 LIMS3P0CW19 117 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 LIMS4P0CW20 117 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 PNMTP11086 282 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 HIST1H1CP16403 213 aaKnown RBP9.35□□□□□ -0.91
MCF2-209ENST00000520602 PRPS1P60891 318 aa9.35□□□□□ -0.91
MCF2-209ENST00000520602 ACTA2P62736 377 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms