RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ZNF814B7Z6K7 855 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 GPR171O14626 319 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 HS3ST1O14792 307 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 CLOCKO15516 846 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 DNPH1O43598 174 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 TMCC2O75069 709 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 BCAS1O75363 584 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 PMS2P2O95744 297 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 CHRM4P08173 479 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 INHBBP09529 407 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 POLR2HP52434 150 aaKnown RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 PDK3Q15120 406 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 STK11Q15831 433 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 SLC9B1Q4ZJI4 515 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 COX20Q5RI15 118 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 BEND6Q5SZJ8 279 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 DNAJC14Q6Y2X3 702 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 MSANTD1Q6ZTZ1 278 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 SSX8Q7RTT4 187 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 ADGRG3Q86Y34 549 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF440Q8IYI8 595 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 AKAP1Q92667 903 aaKnown RBP eCLIP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF75CPQ92670 426 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 MAELQ96JY0 434 aaKnown RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 NAA11Q9BSU3 229 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 BDH2Q9BUT1 245 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 ARMC7Q9H6L4 198 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 THUMPD1Q9NXG2 353 aaKnown RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 TMEM181Q9P2C4 612 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 PRSS50Q9UI38 385 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 NOSIPQ9Y314 301 aaKnown RBP12.12□□□□□ -0.47
TCOF1-215ENST00000515516 TMED7Q9Y3B3 224 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 RNF115Q9Y4L5 304 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 ABCA4P78363 2273 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 AP3D1O14617 1153 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 KLF11O14901 512 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 EIF1BO60739 113 aaKnown RBP12.11□□□□□ -0.47
TCOF1-215ENST00000515516 LYZL6O75951 148 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 CNOT4O95628 575 aaKnown RBP12.11□□□□□ -0.47
TCOF1-215ENST00000515516 PLAUP00749 431 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 C1QCP02747 245 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 SLC1A3P43003 542 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 POLR2JP52435 117 aaKnown RBP12.11□□□□□ -0.47
TCOF1-215ENST00000515516 MAP2K6P52564 334 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 CRISP3P54108 245 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 STX1BP61266 288 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 COPZ1P61923 177 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 SLC35A1P78382 337 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 TAB1Q15750 504 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 LIN52Q52LA3 116 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 C6orf10Q5SRN2 563 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF611Q8N823 705 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 APH1AQ96BI3 265 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 DNAJA3Q96EY1 480 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 Q96MF0 132 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 TMEM204Q9BSN7 226 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 GSX2Q9BZM3 304 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 OR11A1Q9GZK7 315 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 SDR39U1Q9NRG7 319 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-215ENST00000515516 ING1Q9UK53 422 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-215ENST00000515516 PRDM4Q9UKN5 801 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF232Q9UNY5 417 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 TRAPPC4Q9Y296 219 aa12.11□□□□□ -0.47
TCOF1-215ENST00000515516 MED13LQ71F56 2210 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 IGKV3D-15A0A087WSY6 115 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 CIB4A0PJX0 185 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 CCT8L1PA6NM43 557 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 FAAHO00519 579 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF208O43345 1280 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 MRPL33O75394 65 aaKnown RBP12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ZCCHC18P0CG32 403 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ETFAP13804 333 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 GGT1P19440 569 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 CXCR1P25024 350 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 TACR3P29371 465 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 PTH2RP49190 550 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 DSTNP60981 165 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 LARS2Q15031 903 aaKnown RBP12.1□□□□□ -0.47
TCOF1-215ENST00000515516 PPA1Q15181 289 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ZSWIM7Q19AV6 140 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 NCMAPQ5T1S8 102 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 MRPL2Q5T653 305 aaKnown RBP12.1□□□□□ -0.47
TCOF1-215ENST00000515516 AGBL2Q5U5Z8 902 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 FBXW9Q5XUX1 488 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ABLIM2Q6H8Q1 611 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 CLEC9AQ6UXN8 241 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.1□□□□□ -0.47
TCOF1-215ENST00000515516 P2RY8Q86VZ1 359 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 KRTAP1-3Q8IUG1 177 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 OR52P1PQ8NH57 321 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 LRRC8CQ8TDW0 803 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 ARL5BQ96KC2 179 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 OR52B2Q96RD2 323 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 RAD21L1Q9H4I0 556 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 TPT1P8Q9HAU6 139 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 OSGIN1Q9UJX0 560 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 USH1CQ9Y6N9 552 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 PCNX3Q9H6A9 2034 aa12.1□□□□□ -0.47
TCOF1-215ENST00000515516 TMEM72A0PK05 275 aa12.09□□□□□ -0.47
TCOF1-215ENST00000515516 FAM234BA2RU67 622 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms