RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C19orf24Q9BVV8 132 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RSPO3Q9BXY4 272 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 FRMD8P1Q9BZ68 369 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 MRPL37Q9BZE1 423 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 DDX47Q9H0S4 455 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 NAPBQ9H115 298 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RHBGQ9H310 441 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DHX33Q9H6R0 707 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CD209Q9NNX6 404 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MRPL17Q9NRX2 175 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 AGPAT3Q9NRZ7 376 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 EXD2Q9NVH0 621 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TAS2R16Q9NYV7 291 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CNIH4Q9P003 139 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 UVRAGQ9P2Y5 699 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ENOPH1Q9UHY7 261 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DNAJC12Q9UKB3 198 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDH9Q9ULB4 789 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PACSIN2Q9UNF0 486 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 RPL26L1Q9UNX3 145 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 GINS2Q9Y248 185 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RPH3AQ9Y2J0 694 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 MAD1L1Q9Y6D9 718 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ATP10AO60312 1499 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GOLGA3Q08378 1498 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PLEKHH2Q8IVE3 1493 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FYCO1Q9BQS8 1478 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MRC2Q9UBG0 1479 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 RAI1Q7Z5J4 1906 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 RTEL1-TNFRSF6BF6WH68 1400 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 UACAQ9BZF9 1416 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 WDR97A6NE52 1622 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SHROOM2Q13796 1616 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MSH6P52701 1360 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 AKAP12Q02952 1782 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MROH7Q68CQ1 1323 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 MAP3K15Q6ZN16 1313 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF608Q9ULD9 1512 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 A0A0A6YYC8 382 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 A0A0U1RQV5 110 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 GSTTP1A0A1W2PQM5 241 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TMEM120BA0PK00 339 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF320A2RRD8 509 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ARHGEF35A5YM69 484 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM47DPA6NHR8 397 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF233A6NK53 670 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF98A6NK75 572 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ATP6V1G2-DDX39BF2Z307 99 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 H0Y8G0 127 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 H0YJX3 145 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 H7C0C1 242 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 I3L1I5 382 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 WRBO00258 174 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PGRMC1O00264 195 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 GPR171O14626 319 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PSMA7O14818 248 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 IFIT3O14879 490 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 ANGPT2O15123 496 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CTDSPLO15194 276 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ACOX3O15254 700 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 HSF2BPO75031 334 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDH16O75309 829 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TRIM3O75382 744 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 IDH1O75874 414 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDK14O94921 469 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 DEXIO95424 95 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NSA2O95478 260 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 SNAP29O95721 258 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 NUDT14O95848 222 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SLC16A8O95907 504 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CALB1P05937 261 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CD5P06127 495 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 KRT16P08779 473 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 FAM228BP0C875 321 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 UBTFL1P0CB47 393 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZCCHC18P0CG32 403 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TPBGLP0DKB5 382 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ZNF823P16415 610 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 ACP1P24666 158 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CCR1P32246 355 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CTNNB1P35222 781 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PCK1P35558 622 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TALDO1P37837 337 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 OR3A4PP47883 348 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 EIF2B2P49770 351 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 BCAP31P51572 246 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SLC7A2P52569 658 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 CDH4P55283 916 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 SPCS3P61009 180 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 STX1BP61266 288 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 YWHAHQ04917 246 aaPredicted RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 GTF3C1Q12789 2109 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 BAMBIQ13145 260 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LASP1Q14847 261 aaKnown RBP1.51□□□□□ -2.17
NUP54-208ENST00000508604 MORF4L2Q15014 288 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 PON2Q15165 354 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LRRC36Q1X8D7 754 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 LIN52Q52LA3 116 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 YIF1BQ5BJH7 314 aa1.51□□□□□ -2.17
NUP54-208ENST00000508604 TCHHL1Q5QJ38 904 aaPredicted RBP1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms