RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 FBXO17Q96EF6 278 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SOX7Q9BT81 388 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 TRMOQ9BU70 441 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CCDC106Q9BWC9 280 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 OR11A1Q9GZK7 315 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 SLC17A5Q9NRA2 495 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 CTPS2Q9NRF8 586 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 ACER3Q9NUN7 267 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 FKBP7Q9Y680 259 aa12.86□□□□□ -0.35
TRAF4-212ENST00000498540 NDUFS8O00217 210 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 GPR171O14626 319 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 KIAA0513O60268 411 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 BCAS1O75363 584 aaPredicted RBP12.85□□□□□ -0.35
TRAF4-212ENST00000498540 UGT2B17O75795 530 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 PMS2P2O95744 297 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 PGRP06401 933 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 DDX5P17844 614 aaKnown RBP12.85□□□□□ -0.35
TRAF4-212ENST00000498540 PGCP20142 388 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 CARTPTQ16568 116 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 CASP12Q6UXS9 341 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 ANKS4BQ8N8V4 417 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 CCDC63Q8NA47 563 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 TWIST2Q8WVJ9 160 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 TMEM234Q8WY98 164 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 ZHX1-C8orf76Q96EF9 292 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 C1orf159Q96HA4 380 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 FOXN4Q96NZ1 517 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 CHRNA9Q9UGM1 479 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 MKLN1Q9UL63 735 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 MOKQ9UQ07 419 aa12.85□□□□□ -0.35
TRAF4-212ENST00000498540 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.85□□□□□ -0.35
TRAF4-212ENST00000498540 TMEM114B3SHH9 223 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 PIP5K1BO14986 540 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 CHEK2O96017 543 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 TGFAP01135 160 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 CHRNGP07510 517 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 SOAT1P35610 550 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 RPL3P39023 403 aaKnown RBP12.84□□□□□ -0.35
TRAF4-212ENST00000498540 SQLEQ14534 574 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 MAPK14Q16539 360 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 CR1LQ2VPA4 569 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 UGT3A2Q3SY77 523 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 LIPNQ5VXI9 398 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 C10orf107Q8IVU9 208 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 CLEC4FQ8N1N0 589 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 C17orf78Q8N4C9 275 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 KRTCAP2Q8N6L1 136 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 FAM71CQ8NEG0 241 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 C1orf162Q8NEQ5 155 aaPredicted RBP12.84□□□□□ -0.35
TRAF4-212ENST00000498540 C1orf50Q9BV19 199 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 GATA5Q9BWX5 397 aaPredicted RBP12.84□□□□□ -0.35
TRAF4-212ENST00000498540 SLC7A10Q9NS82 523 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 DCTN4Q9UJW0 460 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 AMDHD2Q9Y303 409 aa12.84□□□□□ -0.35
TRAF4-212ENST00000498540 TENM1Q9UKZ4 2725 aa12.83□□□□□ -0.35
TRAF4-212ENST00000498540 CFLARO15519 480 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 WIPF1O43516 503 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 STX11O75558 287 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 FAM153BP0C7A2 387 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 ZNF23P17027 643 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 CRHR1P34998 444 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 PGM1P36871 562 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 APOBEC1P41238 236 aaKnown RBP12.83□□□□□ -0.36
TRAF4-212ENST00000498540 HBA1P69905 142 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 RUNX1T1Q06455 604 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 PCLAFQ15004 111 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 LSM12Q3MHD2 195 aaKnown RBP12.83□□□□□ -0.36
TRAF4-212ENST00000498540 FAM153CQ494X1 144 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 IQCCQ4KMZ1 466 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 TSPO2Q5TGU0 170 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 EIF3MQ7L2H7 374 aaKnown RBP12.83□□□□□ -0.36
TRAF4-212ENST00000498540 ZNF563Q8TA94 476 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 MOAP1Q96BY2 351 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 COQ8BQ96D53 544 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 BPESC1Q9GZL8 116 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 ZNF350Q9GZX5 532 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 ATAD3AQ9NVI7 634 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 UPB1Q9UBR1 384 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 HDGFL3Q9Y3E1 203 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 FLVCR1Q9Y5Y0 555 aa12.83□□□□□ -0.36
TRAF4-212ENST00000498540 SPIN1Q9Y657 262 aaPredicted RBP12.83□□□□□ -0.36
TRAF4-212ENST00000498540 LOC390937A0A1W2PQ73 354 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 LRP5LA4QPB2 252 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 DNPH1O43598 174 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 PEX11AO75192 247 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 SLU7O95391 586 aaKnown RBP12.82□□□□□ -0.36
TRAF4-212ENST00000498540 AK1P00568 194 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 ITGA2P17301 1181 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 CCNA2P20248 432 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 MATN1P21941 496 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 MAPK1P28482 360 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 RYKP34925 604 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 MAGEA8P43361 318 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 CCT5P48643 541 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 OR2B6P58173 313 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 SNRPD2P62316 118 aaKnown RBP12.82□□□□□ -0.36
TRAF4-212ENST00000498540 H3F3AP84243 136 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 PLAURQ03405 335 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 ARHGAP11BQ3KRB8 267 aa12.82□□□□□ -0.36
TRAF4-212ENST00000498540 XKR7Q5GH72 579 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms