RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 DNAJB13P59910 316 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 PDK3Q15120 406 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 TRIP10Q15642 601 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 HHATQ5VTY9 493 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 GPRIN3Q6ZVF9 776 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 PEG10Q86TG7 708 aaKnown RBP14.35□□□□□ -0.11
VIM-208ENST00000497849 NUP43Q8NFH3 380 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 OR52E4Q8NGH9 312 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 CEP70Q8NHQ1 597 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 L3HYPDHQ96EM0 354 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 OR5B2Q96R09 309 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 KCNA7Q96RP8 456 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 ZNF696Q9H7X3 374 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 SLC17A5Q9NRA2 495 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 EMC3Q9P0I2 261 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 MID2Q9UJV3 735 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 NOSIPQ9Y314 301 aaKnown RBP14.35□□□□□ -0.11
VIM-208ENST00000497849 POLR3HQ9Y535 204 aaPredicted RBP14.35□□□□□ -0.11
VIM-208ENST00000497849 TIMM22Q9Y584 194 aa14.35□□□□□ -0.11
VIM-208ENST00000497849 TM9SF1O15321 606 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 GPC1P35052 558 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 DIO1P49895 249 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 HILS1P60008 231 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 KLHL26Q53HC5 615 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 AWAT1Q58HT5 328 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.34□□□□□ -0.11
VIM-208ENST00000497849 C9orf135Q5VTT2 229 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 LIPMQ5VYY2 423 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 NUDCD3Q8IVD9 361 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 COX18Q8N8Q8 333 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 ZNF527Q8NB42 609 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 ZNF418Q8TF45 676 aaPredicted RBP14.34□□□□□ -0.11
VIM-208ENST00000497849 CIDECQ96AQ7 238 aaPredicted RBP14.34□□□□□ -0.11
VIM-208ENST00000497849 CCDC126Q96EE4 140 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 MS4A4EQ96PG1 132 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 GIN1Q9NXP7 522 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 AMDHD2Q9Y303 409 aa14.34□□□□□ -0.11
VIM-208ENST00000497849 VWFP04275 2813 aa14.33□□□□□ -0.11
VIM-208ENST00000497849 SERTM1A2A2V5 107 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 B9A039 149 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 TRIM77I1YAP6 450 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 ALOX5P09917 674 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 DAOP14920 347 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 PGCP20142 388 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 BGNP21810 368 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 PCMT1P22061 227 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 ARRB2P32121 409 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 ARFIP2P53365 341 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 QPRTQ15274 297 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 TIGD2Q4W5G0 525 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 CFAP157Q5JU67 520 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 SPDYAQ5MJ70 313 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 ANKRD26P1Q6NSI1 321 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 C3orf33Q6P1S2 294 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 TMPPEQ6ZT21 453 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 SZRD1Q7Z422 152 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 SPATA19Q7Z5L4 167 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 C17orf78Q8N4C9 275 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 TOR1AIP2Q8NFQ8 470 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 EGLN2Q96KS0 407 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 QRSL1Q9H0R6 528 aaKnown RBP14.33□□□□□ -0.12
VIM-208ENST00000497849 PLK3Q9H4B4 646 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 TNFRSF12AQ9NP84 129 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 CA10Q9NS85 328 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 NKIRAS1Q9NYS0 192 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 PCDHB10Q9UN67 800 aa14.33□□□□□ -0.12
VIM-208ENST00000497849 WBP11Q9Y2W2 641 aaKnown RBP14.33□□□□□ -0.12
VIM-208ENST00000497849 SNUPNO95149 360 aaKnown RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 HSPA4LO95757 839 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 NEFHP12036 1026 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 PPOXP50336 477 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 IDH3GP51553 393 aaPredicted RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 POU6F2P78424 691 aaPredicted RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 RIN1Q13671 783 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 CCNIQ14094 377 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 EFNB3Q15768 340 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 CHI3L2Q15782 390 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 ADIPOQQ15848 244 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 ZNF385BQ569K4 471 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 IKBIPQ70UQ0 350 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 MTDHQ86UE4 582 aaKnown RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 C1orf162Q8NEQ5 155 aaPredicted RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 RFWD2Q8NHY2 731 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 RBM4Q9BWF3 364 aaKnown RBP14.32□□□□□ -0.12
VIM-208ENST00000497849 BTBD2Q9BX70 525 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 SPEF1Q9Y4P9 236 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 PCDHGB1Q9Y5G3 927 aa14.32□□□□□ -0.12
VIM-208ENST00000497849 SULT2B1O00204 365 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 PDPK1O15530 556 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 ITM2AO43736 263 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 MRPL33O75394 65 aaKnown RBP14.31□□□□□ -0.12
VIM-208ENST00000497849 LYPLA1O75608 230 aaPredicted RBP14.31□□□□□ -0.12
VIM-208ENST00000497849 CHRNGP07510 517 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 OR4A8P0C604 315 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 SLC18A1P54219 525 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 ZCCHC12Q6PEW1 402 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 FRMD7Q6ZUT3 714 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 USP43Q70EL4 1123 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 GLCCI1Q86VQ1 547 aa14.31□□□□□ -0.12
VIM-208ENST00000497849 ZCCHC24Q8N2G6 241 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms