RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SPEF1Q9Y4P9 236 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 CCL27Q9Y4X3 112 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 SPIN1Q9Y657 262 aaPredicted RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 NUP214P35658 2090 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 IGHV1-18A0A0C4DH31 117 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 A0A0G2JK05 382 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SERINC4A6NH21 518 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 URI1O94763 535 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SLU7O95391 586 aaKnown RBP12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 KRT16P08779 473 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 OR4A8P0C604 315 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 FKBP2P26885 142 aaKnown RBP12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 MPGP29372 298 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 MAGEA8P43361 318 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 RNF144AP50876 292 aaPredicted RBP12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SESN3P58005 492 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 MERTKQ12866 999 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 C3orf36Q3SXR2 165 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 CASP12Q6UXS9 341 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SPATA19Q7Z5L4 167 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 ZNF614Q8N883 585 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 DCAKDQ8WVC6 231 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 MTERF3Q96E29 417 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 CHMP6Q96FZ7 201 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SLC38A2Q96QD8 506 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 JMJD8Q96S16 334 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 KCNS3Q9BQ31 491 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 ACTRT3Q9BYD9 372 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 NMUR2Q9GZQ4 415 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 SLC7A10Q9NS82 523 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 ZDHHC18Q9NUE0 388 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 ACER3Q9NUN7 267 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 TMEM216Q9P0N5 145 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 UPB1Q9UBR1 384 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 PCDHB10Q9UN67 800 aa12.38□□□□□ -0.43
PRPF40A-211ENST00000493468 ANKRD28O15084 1053 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 SEC22BO75396 215 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 CRYAAP02489 173 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 CREB1P16220 341 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 APOBEC1P41238 236 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 CLK1P49759 484 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 NAA20P61599 178 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 H3F3AP84243 136 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 C2orf54Q08AI8 447 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 C9orf135Q5VTT2 229 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 PEG10Q86TG7 708 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 ADAMTS15Q8TE58 950 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 THUMPD3Q9BV44 507 aaKnown RBP12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 ZNF442Q9H7R0 627 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 SH3BP4Q9P0V3 963 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 CHRNA9Q9UGM1 479 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 FLVCR1Q9Y5Y0 555 aa12.37□□□□□ -0.43
PRPF40A-211ENST00000493468 TMPRSS2O15393 492 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 DDX5P17844 614 aaKnown RBP12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 SDC1P18827 310 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 SLC1A3P43003 542 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TRIP10Q15642 601 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 AWAT1Q58HT5 328 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 PDZK1Q5T2W1 519 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TSPO2Q5TGU0 170 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 SHQ1Q6PI26 577 aaKnown RBP12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TEX29Q8N6K0 151 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 NUP37Q8NFH4 326 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 OR4F15Q8NGB8 312 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 OR56A1Q8NGH5 318 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 PSMA8Q8TAA3 256 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 WDR60Q8WVS4 1066 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TMEM45BQ96B21 275 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TMEM186Q96B77 213 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 ARL5BQ96KC2 179 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 CCDC106Q9BWC9 280 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 MOV10Q9HCE1 1003 aaKnown RBP12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 GPATCH2Q9NW75 528 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 C1orf109Q9NX04 203 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 CRNNQ9UBG3 495 aaPredicted RBP12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 TRAPPC4Q9Y296 219 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 GRIP1Q9Y3R0 1128 aa12.36□□□□□ -0.43
PRPF40A-211ENST00000493468 AKAP10O43572 662 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 SNRPAP09012 282 aaKnown RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 TFPIP10646 304 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 IFNGR1P15260 489 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 NAAAQ02083 359 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 POU3F1Q03052 451 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 ZNF141Q15928 474 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 TIFABQ6ZNK6 161 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 R3HCC1LQ7Z5L2 792 aaKnown RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 ABHD12BQ7Z5M8 362 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 CCDC103Q8IW40 242 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 POMGNT2Q8NAT1 580 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 UBASH3BQ8TF42 649 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 OIT3Q8WWZ8 545 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 CCDC126Q96EE4 140 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 TSSK3Q96PN8 268 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 ZNF317Q96PQ6 595 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 DOK1Q99704 481 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 ZNF747Q9BV97 191 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 FAF1Q9UNN5 650 aaPredicted RBP12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 USP22Q9UPT9 525 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 KCNE3Q9Y6H6 103 aa12.35□□□□□ -0.43
PRPF40A-211ENST00000493468 PRKDCP78527 4128 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms