RNA–Protein interactions for RNA: ENST00000492977.5

PTPN7-216, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 1,595 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-216ENST00000492977 NPFFR2Q9Y5X5 522 aa12.84□□□□□ -0.35
PTPN7-216ENST00000492977 TMEM129A0AVI4 362 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 RIIAD1A6NNX1 92 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 FADS1O60427 444 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 OR7A10O76100 309 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 NDUFB2O95178 105 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 HK1P19367 917 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ETV5P41161 510 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ETV1P50549 477 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 NCS1P62166 190 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TUBA1BP68363 451 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ZNF117Q03924 483 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TMED1Q13445 227 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TSTQ16762 297 aaKnown RBP12.83□□□□□ -0.36
PTPN7-216ENST00000492977 DGUOKQ16854 277 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 PLA2G2CQ5R387 149 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ARMC4Q5T2S8 1044 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TCEAL6Q6IPX3 200 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 LINC00299Q6ZSB3 139 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TUBA1AQ71U36 451 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 MARCH3Q86UD3 253 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 CACTIN-AS1Q8N1I8 211 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ZNF563Q8TA94 476 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 NDNFQ8TB73 568 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 LIPHQ8WWY8 451 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 RPL3LQ92901 407 aaKnown RBP12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TCEAL3Q969E4 200 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 OPALINQ96PE5 141 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 TAPBPLQ9BX59 468 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 ISYNA1Q9NPH2 558 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 GPN3Q9UHW5 284 aaPredicted RBP12.83□□□□□ -0.36
PTPN7-216ENST00000492977 PCDHGA3Q9Y5H0 932 aa12.83□□□□□ -0.36
PTPN7-216ENST00000492977 IGKV1D-42A0A075B6H8 117 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 B4E171 279 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 PRR23D1E9PI22 279 aaPredicted RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 HCRTR2O43614 444 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 IFNGP01579 166 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 PRR23D2P0DMB1 279 aaPredicted RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 NAGAP17050 411 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 PGCP20142 388 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 CCKBRP32239 447 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 EVI2BP34910 448 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 TSPAN7P41732 249 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 SERPINB10P48595 397 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 MLLT11Q13015 90 aaPredicted RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 MOGQ16653 247 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 SLC35F1Q5T1Q4 408 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 PLBD1Q6P4A8 553 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 ARHGAP11AQ6P4F7 1023 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 LYPD8Q6UX82 237 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 MEPCEQ7L2J0 689 aaKnown RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 ATCAYQ86WG3 371 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 MISPQ8IVT2 679 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 OR5W2Q8NH69 310 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 DYNC2LI1Q8TCX1 351 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 ZHX1-C8orf76Q96EF9 292 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 JAM3Q9BX67 310 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 RTN4RQ9BZR6 473 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 ZBTB20Q9HC78 741 aaPredicted RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 AKAP7Q9P0M2 348 aaPredicted RBP12.82□□□□□ -0.36
PTPN7-216ENST00000492977 NCOR1O75376 2440 aa12.82□□□□□ -0.36
PTPN7-216ENST00000492977 CCL4P13236 92 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ZNF28P17035 718 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ZNF3P17036 446 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 NOS3P29474 1203 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 LIMK1P53667 647 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 WNT4P56705 351 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 SLC26A5P58743 744 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 PRPS1P60891 318 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ITGADQ13349 1161 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 CBFBQ13951 182 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ZNF362Q5T0B9 420 aaPredicted RBP12.81□□□□□ -0.36
PTPN7-216ENST00000492977 NIPAL3Q6P499 406 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 DPY19L2P2Q6ZN68 376 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 USP43Q70EL4 1123 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 PSD4Q8NDX1 1056 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 BBS1Q8NFJ9 593 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 PTP4A1Q93096 173 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 SH3YL1Q96HL8 342 aaPredicted RBP12.81□□□□□ -0.36
PTPN7-216ENST00000492977 SLC39A1Q9NY26 324 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 LOC102723996A0A087X1L8 192 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 TRBV11-1A0A0K0K1C0 115 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 LNP1A1A4G5 178 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 FAM183AA6NL82 134 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 C9J4A7 227 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 SOCS6O14544 535 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 IDH3BO43837 385 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 GDF9O60383 454 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 CDC40O60508 579 aaKnown RBP eCLIP12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ZFAND5O76080 213 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 PPP1R3DO95685 299 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 IGHA1P01876 353 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 PAICSP22234 425 aaKnown RBP12.81□□□□□ -0.36
PTPN7-216ENST00000492977 MST1P26927 711 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ITPKBP27987 946 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 TACR3P29371 465 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 ATP6V1E1P36543 226 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 P2RX1P51575 399 aa12.81□□□□□ -0.36
PTPN7-216ENST00000492977 RPS4XP62701 263 aaKnown RBP12.81□□□□□ -0.36
PTPN7-216ENST00000492977 DCTN2Q13561 401 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms