RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RAB3BP20337 219 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 NAA10P41227 235 aaPredicted RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 NRG3P56975 720 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 FAM53BQ14153 422 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 SHHQ15465 462 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 TRAM1Q15629 374 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 BTBD16Q32M84 506 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 PLA1AQ53H76 456 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 BCL2L15Q5TBC7 163 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 LIX1LQ8IVB5 337 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 OR4D9Q8NGE8 314 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 DEDD2Q8WXF8 326 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 AKAP1Q92667 903 aaKnown RBP eCLIP16.53■□□□□ 0.24
VIM-206ENST00000487938 TWSG1Q9GZX9 223 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 SYNDIG1Q9H7V2 258 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 C14orf105Q9NVL8 296 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 DNAJB12Q9NXW2 375 aaKnown RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 AK1P00568 194 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 TFP02787 698 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 ATXN8OSP0DMR3 200 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 SNRPBP14678 240 aaKnown RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 SLC6A6P31641 620 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 TAS2R43P59537 309 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 NDUFAF6Q330K2 333 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 Q6ZSR6 202 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 ZNF655Q8N720 491 aaPredicted RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 ASB12Q8WXK4 309 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 THAP4Q8WY91 577 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 CCDC3Q9BQI4 270 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 FAM60AQ9NP50 221 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 ST6GALNAC2Q9UJ37 374 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 IER3IP1Q9Y5U9 82 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 CACNG2Q9Y698 323 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 TICRRQ7Z2Z1 1910 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 OR2W5A6NFC9 320 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 IMPA2O14732 288 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 ZNF780AO75290 641 aaPredicted RBP16.52■□□□□ 0.24
VIM-206ENST00000487938 CDC123O75794 336 aaPredicted RBP16.52■□□□□ 0.24
VIM-206ENST00000487938 CD3GP09693 182 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 PRKCAP17252 672 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 TYRP1P17643 537 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 CD53P19397 219 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 SDHBP21912 280 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 ILF3Q12906 894 aaKnown RBP eCLIP16.52■□□□□ 0.24
VIM-206ENST00000487938 MRPL28Q13084 256 aaKnown RBP16.52■□□□□ 0.24
VIM-206ENST00000487938 MAB21L1Q13394 359 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 NTRK2Q16620 822 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 ESPNLQ6ZVH7 1005 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 ZNRF4Q8WWF5 429 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 ZFP3Q96NJ6 502 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 DTX4Q9Y2E6 619 aa16.52■□□□□ 0.24
VIM-206ENST00000487938 A0A0J9YY10 115 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 ARHGEF9O43307 516 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 IFNGP01579 166 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 BTCP35070 178 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 TNK1Q13470 666 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 NNATQ16517 81 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 SLC36A2Q495M3 483 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 GXYLT1Q4G148 440 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 HSD17B8Q92506 261 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 NIPAL2Q9H841 368 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 FOLH1BQ9HBA9 442 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 HAO2Q9NYQ3 351 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 FBXL21Q9UKT6 434 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 ADAM18Q9Y3Q7 739 aa16.52■□□□□ 0.23
VIM-206ENST00000487938 MCIDASD6RGH6 385 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 S1PR1P21453 382 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 ERV3-1Q14264 604 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 FAM205BPQ63HN1 556 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 LAMTOR1Q6IAA8 161 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 MTFR2Q6P444 385 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 RNF44Q7L0R7 432 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 NANOGNBQ7Z5D8 188 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 RSC1A1Q92681 617 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 GAS2L1Q99501 681 aaPredicted RBP16.51■□□□□ 0.23
VIM-206ENST00000487938 GON7Q9BXV9 100 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 TRIM2Q9C040 744 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 SCML1Q9UN30 329 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 BAIAP2Q9UQB8 552 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 HSPB11Q9Y547 144 aa16.51■□□□□ 0.23
VIM-206ENST00000487938 TNFRSF10CO14798 259 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 OR2B3O76000 313 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ALX3O95076 343 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 SLC35E2P0CK97 266 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ATF1P18846 271 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 HTR2BP41595 481 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 TPMTP51580 245 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 RAB38P57729 211 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 FCN2Q15485 313 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 PYHIN1Q6K0P9 492 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ARHGAP11AQ6P4F7 1023 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 KIRREL2Q6UWL6 708 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 LYPD4Q6UWN0 246 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 TMEM92Q6UXU6 159 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 MS4A15Q8N5U1 240 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 GRPEL2Q8TAA5 225 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ORAI1Q96D31 301 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 PELI1Q96FA3 418 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 SPACA7Q96KW9 195 aa16.5■□□□□ 0.23
VIM-206ENST00000487938 ZNF426Q9BUY5 554 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms