RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TIMP3P35625 211 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 OR1E2P47887 323 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 PTDSS1P48651 473 aaKnown RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 GRAMD1BQ3KR37 738 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 KLHL26Q53HC5 615 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 MRPL2Q5T653 305 aaKnown RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 OGFRL1Q5TC84 451 aaPredicted RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 BICRALQ6AI39 1079 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 HMGN2P46Q86SG4 172 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 LACC1Q8IV20 430 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 NODALQ96S42 347 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 ADOQ96SZ5 270 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 TIMP4Q99727 224 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 POLR2J2Q9GZM3 115 aaKnown RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 POLR2J3Q9H1A7 115 aaKnown RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 CHST2Q9Y4C5 530 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 CACNA1CQ13936 2221 aa15.41■□□□□ 0.06
VIM-205ENST00000485947 PHF3Q92576 2039 aaKnown RBP15.41■□□□□ 0.06
VIM-205ENST00000485947 SERINC4A6NH21 518 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 H3BNH8 94 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 M0R3H8 397 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 PRF1P14222 555 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 VHLP40337 213 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 PTGDSP41222 190 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 RGS8P57771 180 aaPredicted RBP15.4■□□□□ 0.06
VIM-205ENST00000485947 TSEN54Q7Z6J9 526 aaKnown RBP15.4■□□□□ 0.06
VIM-205ENST00000485947 COMTD1Q86VU5 262 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 ZNF440Q8IYI8 595 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 CLIP4Q8N3C7 705 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 SVOPLQ8N434 492 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 RPRMLQ8N4K4 120 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 ZNF614Q8N883 585 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 OR4C3Q8NH37 302 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 VANGL1Q8TAA9 524 aaPredicted RBP15.4■□□□□ 0.06
VIM-205ENST00000485947 PIP5K1AQ99755 562 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 SEMA6AQ9H2E6 1030 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 C8orf4Q9NR00 106 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 SDHAF3Q9NRP4 125 aa15.4■□□□□ 0.06
VIM-205ENST00000485947 TESQ9UGI8 421 aaKnown RBP15.4■□□□□ 0.06
VIM-205ENST00000485947 CD8B2A6NJW9 211 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 ALG1L2C9J202 215 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 C19orf84I3L1E1 186 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 AP3D1O14617 1153 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 FMO6PO60774 539 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 CPN1P15169 458 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 MSX1P28360 303 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 IFNA8P32881 189 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 CLK3P49761 638 aaKnown RBP15.39■□□□□ 0.05
VIM-205ENST00000485947 SMIM11AP58511 58 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 TFF3Q07654 80 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 DEF8Q6ZN54 512 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 ZNF550Q7Z398 422 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 RANBP3LQ86VV4 465 aaPredicted RBP15.39■□□□□ 0.05
VIM-205ENST00000485947 PLCZ1Q86YW0 608 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 MISPQ8IVT2 679 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 WDSUB1Q8N9V3 476 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 ICA1LQ8NDH6 482 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 OR4D11Q8NGI4 311 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 OR6T1Q8NGN1 323 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 OR5K1Q8NHB7 308 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 ABTB1Q969K4 478 aaPredicted RBP15.39■□□□□ 0.05
VIM-205ENST00000485947 EME1Q96AY2 570 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 LRRC46Q96FV0 321 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 PRRC1Q96M27 445 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 C9orf16Q9BUW7 83 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 OR2B2Q9GZK3 357 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 REEP1Q9H902 201 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 CALHM2Q9HA72 323 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 NTN4Q9HB63 628 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 DNAJB12Q9NXW2 375 aaKnown RBP15.39■□□□□ 0.05
VIM-205ENST00000485947 ALKBH4Q9NXW9 302 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 ZNF629Q9UEG4 869 aaPredicted RBP15.39■□□□□ 0.05
VIM-205ENST00000485947 WIF1Q9Y5W5 379 aa15.39■□□□□ 0.05
VIM-205ENST00000485947 A0A0G2JNJ9 132 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 CLDN24A6NM45 220 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 GNB5O14775 395 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 CSTAP01040 98 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 BMP7P18075 431 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 FPR1P21462 350 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 PEX2P28328 305 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 SRD5A2P31213 254 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 RRM2P31350 389 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 DNAJA1P31689 397 aaKnown RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 CEACAM8P31997 349 aaPredicted RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 ARHGDIAP52565 204 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 SPIBQ01892 262 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 TOMM20Q15388 145 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 ACSF3Q4G176 576 aaPredicted RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 NSUN5P2Q63ZY6 315 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 LPCAT4Q643R3 524 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 MEX3BQ6ZN04 569 aaKnown RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 CCDC71Q8IV32 467 aaPredicted RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 ZNF295-AS1Q8N0V1 137 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 FAM83FQ8NEG4 500 aaPredicted RBP15.38■□□□□ 0.05
VIM-205ENST00000485947 ZPLD1Q8TCW7 415 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 NRG4Q8WWG1 115 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 NRBF2Q96F24 287 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 DHRS1Q96LJ7 313 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 EPYCQ99645 322 aa15.38■□□□□ 0.05
VIM-205ENST00000485947 KLHL4Q9C0H6 718 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms