RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 MUC6Q6W4X9 2439 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 OR7A10O76100 309 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 CCR4P51679 360 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 DLX5P56178 289 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 EGR4Q05215 589 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 CBFBQ13951 182 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 TRIP6Q15654 476 aaKnown RBP12.8□□□□□ -0.36
CLK3-204ENST00000483723 TMEM44Q2T9K0 475 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 BTBD16Q32M84 506 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 ZNF362Q5T0B9 420 aaPredicted RBP12.8□□□□□ -0.36
CLK3-204ENST00000483723 OAFQ86UD1 273 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 ANKRD13BQ86YJ7 626 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 ARMC10Q8N2F6 343 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 TMCO5AQ8N6Q1 288 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 PRSS33Q8NF86 280 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 OR11G2Q8NGC1 345 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 B4GALNT2Q8NHY0 566 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 ZNF563Q8TA94 476 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 SLC22A8Q8TCC7 542 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 DUSP19Q8WTR2 217 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 CT55Q8WUE5 264 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 C12orf43Q96C57 262 aaKnown RBP12.8□□□□□ -0.36
CLK3-204ENST00000483723 SH3YL1Q96HL8 342 aaPredicted RBP12.8□□□□□ -0.36
CLK3-204ENST00000483723 NAA50Q9GZZ1 169 aaKnown RBP12.8□□□□□ -0.36
CLK3-204ENST00000483723 PCDHGB6Q9Y5F9 930 aa12.8□□□□□ -0.36
CLK3-204ENST00000483723 PCNX2A6NKB5 2137 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 C17orf51A8MQB3 221 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 SCO2O43819 266 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 CDC40O60508 579 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLK3-204ENST00000483723 CH25HO95992 272 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 LCKP06239 509 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TACR3P29371 465 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TMED10P49755 219 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 FOXK2Q01167 660 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 C17orf67Q0P5P2 114 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TOMM34Q15785 309 aaPredicted RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 NTRK2Q16620 822 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 DHRS13Q6UX07 377 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 NDUFAF7Q7L592 441 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 OR51A7Q8NH64 312 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TMEM80Q96HE8 168 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 RASL10BQ96S79 203 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TSC22D3Q99576 134 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 B3GNT4Q9C0J1 378 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 FGF20Q9NP95 211 aaPredicted RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 IL20RAQ9UHF4 553 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 OSGIN1Q9UJX0 560 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TCFL5Q9UL49 500 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 FARSAQ9Y285 508 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 ZNF337Q9Y3M9 751 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TRAV27A0A087WT01 109 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 IGLV3-32A0A0A0MS00 114 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 SNTNA6NMZ2 147 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 M0R082 166 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 GNB5O14775 395 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 OR2J2O76002 312 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 GP1BBP13224 206 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 TCN2P20062 427 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 SLC6A6P31641 620 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 PTGDSP41222 190 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 ST13P50502 369 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 SUMO3P55854 103 aaPredicted RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 RPS4XP62701 263 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 SSPNQ14714 243 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 ZNF74Q16587 644 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 ZNF791Q3KP31 576 aaPredicted RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 KLHL22Q53GT1 634 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 NXNL2Q5VZ03 156 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 CCDC81Q6ZN84 652 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 PPP1R32Q7Z5V6 425 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 ERI1Q8IV48 349 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 CACTIN-AS1Q8N1I8 211 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 RAB2BQ8WUD1 216 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 NACC2Q96BF6 587 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 FUNDC2Q9BWH2 189 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 FAM117AQ9C073 453 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 GPN2Q9H9Y4 310 aaPredicted RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 HINT3Q9NQE9 182 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 CMC2Q9NRP2 79 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.79□□□□□ -0.36
CLK3-204ENST00000483723 DIMT1Q9UNQ2 313 aaKnown RBP12.79□□□□□ -0.36
CLK3-204ENST00000483723 GPR52Q9Y2T5 361 aa12.79□□□□□ -0.36
CLK3-204ENST00000483723 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.78□□□□□ -0.36
CLK3-204ENST00000483723 IRGMA1A4Y4 181 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 H3BMQ9 156 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 NDUFB2O95178 105 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 SLC2A10O95528 541 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 TSPAN19P0C672 248 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 ADORA3P0DMS8 318 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 PEPDP12955 493 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 ITPKBP27987 946 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 PCSK6P29122 969 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 LTBQ06643 244 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 RAB40BQ12829 278 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 QPRTQ15274 297 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 COL28A1Q2UY09 1125 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 ANKDD1AQ495B1 522 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 HES3Q5TGS1 186 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 TMEM164Q5U3C3 297 aa12.78□□□□□ -0.36
CLK3-204ENST00000483723 SLC16A12Q6ZSM3 486 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms