RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TRNT1Q96Q11 434 aaKnown RBP14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 PANX1Q96RD7 426 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 MDFIQ99750 246 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 PAIP2Q9BPZ3 127 aaKnown RBP14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 EMC3Q9P0I2 261 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 LIPT1Q9Y234 373 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 HDGFL3Q9Y3E1 203 aa14.66□□□□□ -0.06
CCDC28B-204ENST00000469003 USF3Q68DE3 2245 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 DPRXA6NFQ7 191 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 CCDC154A6NI56 674 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 OVOL3O00110 214 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 DNPH1O43598 174 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 C1QCP02747 245 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 PGRP06401 933 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 DANCRP0C864 163 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 IGHV1-2P23083 117 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 IL12AP29459 219 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ANXA11P50995 505 aaKnown RBP14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 BSPH1Q075Z2 132 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 LRRC74AQ0VAA2 488 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 PPA1Q15181 289 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 STK11Q15831 433 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 SYPL1Q16563 259 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 TIMM23BQ5SRD1 257 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 DNAJC14Q6Y2X3 702 aaPredicted RBP14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 HMGN2P46Q86SG4 172 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ADGRG3Q86Y34 549 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ANKFN1Q8N957 763 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ANKRD42Q8N9B4 389 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 PIGXQ8TBF5 258 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 NEUROG1Q92886 237 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 ARL5BQ96KC2 179 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 OR52E6Q96RD3 313 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 SLC38A1Q9H2H9 487 aa14.65□□□□□ -0.06
CCDC28B-204ENST00000469003 STAB1Q9NY15 2570 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 AGAP5A6NIR3 686 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 CLDN24A6NM45 220 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF716A6NP11 495 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 HDAC3O15379 428 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 ADAM11O75078 769 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 PGM3O95394 542 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 CHRM4P08173 479 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 SOD3P08294 240 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 GGT1P19440 569 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 HTR3AP46098 478 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 IDH2P48735 452 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 WDR4P57081 412 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 LRRC74BQ6ZQY2 392 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 P2RY8Q86VZ1 359 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF433Q8N7K0 673 aaPredicted RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 KBTBD8Q8NFY9 601 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 SMAP2Q8WU79 429 aaPredicted RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 NANOS1Q8WY41 292 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 CNOT9Q92600 299 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 ZBTB9Q96C00 473 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 MUCL1Q96DR8 90 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 TRMT61AQ96FX7 289 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 ZBTB18Q99592 522 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 INPP5KQ9BT40 448 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 TRIM2Q9C040 744 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 OR11A1Q9GZK7 315 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 NOSIPQ9Y314 301 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 GPR45Q9Y5Y3 372 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 TLN2Q9Y4G6 2542 aa14.64□□□□□ -0.07
CCDC28B-204ENST00000469003 TMED7-TICAM2A0A0A6YYA0 188 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 A0A1W2PP18 115 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 TRPC5OSA6NMA1 111 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 AP3D1O14617 1153 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 GPR171O14626 319 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF500O60304 480 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 RPS4Y1P22090 263 aaKnown RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 CDKN2CP42773 168 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 SLC16A1P53985 500 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 ETFDHQ16134 617 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 FBXW9Q5XUX1 488 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF621Q6ZSS3 439 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 GLB1L3Q8NCI6 653 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 WDR60Q8WVS4 1066 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 PMM1Q92871 262 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 APH1AQ96BI3 265 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 WDR55Q9H6Y2 383 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 MTHFD2LQ9H903 347 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 THAP1Q9NVV9 213 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 TMEM181Q9P2C4 612 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 TRAPPC4Q9Y296 219 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 TMED7Q9Y3B3 224 aa14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 MAGED1Q9Y5V3 778 aaPredicted RBP14.63□□□□□ -0.07
CCDC28B-204ENST00000469003 GOLGA8QA0A0J9YX86 632 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 TMEM120BA0PK00 339 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 GOLGA8OA6NCC3 632 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 OR5H1A6NKK0 313 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 GOLGA8NF8WBI6 632 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 FAAHO00519 579 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 ZNF208O43345 1280 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 SNNO75324 88 aaPredicted RBP14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 GSNP06396 782 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 NR2F1P10589 423 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 CCNA2P20248 432 aa14.62□□□□□ -0.07
CCDC28B-204ENST00000469003 EPHA3P29320 983 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms