RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DSCR3O14972 297 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 PLRG1O43660 514 aaKnown RBP10.77□□□□□ -0.68
NPHP4-204ENST00000460696 PEPDP12955 493 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 TRHRP34981 398 aaPredicted RBP10.77□□□□□ -0.68
NPHP4-204ENST00000460696 PITPNBP48739 271 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 ALG10Q5BKT4 473 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 ZCCHC12Q6PEW1 402 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 PRSS41Q7RTY9 318 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 SLC35F2Q8IXU6 374 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 OR2I1PQ8NGU4 316 aa10.77□□□□□ -0.68
NPHP4-204ENST00000460696 ATXN7L1Q9ULK2 861 aaPredicted RBP10.77□□□□□ -0.68
NPHP4-204ENST00000460696 C19orf53Q9UNZ5 99 aaPredicted RBP10.77□□□□□ -0.68
NPHP4-204ENST00000460696 TMEM129A0AVI4 362 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 CTSVO60911 334 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 CHRNB1P11230 501 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SPNP16150 400 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 MAOAP21397 527 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 CD6P30203 668 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 HOXD12P35452 270 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SMAD2Q15796 467 aaKnown RBP10.77□□□□□ -0.69
NPHP4-204ENST00000460696 TMEM69Q5SWH9 247 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 OR5M10Q6IEU7 315 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 TMEM99Q8N816 258 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 DNAJA4Q8WW22 397 aaPredicted RBP10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SLC25A46Q96AG3 418 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 NMNAT3Q96T66 252 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 KATNB1Q9BVA0 655 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 IRF2BPLQ9H1B7 796 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 ARRDC1-AS1Q9H2J1 176 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 KLRF1Q9NZS2 232 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 CBLCQ9ULV8 474 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SATB2Q9UPW6 733 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 CDHR4A6H8M9 788 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 RORAP35398 523 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 HCCSP53701 268 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 BAK1Q16611 211 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 ZNF322Q6U7Q0 402 aaPredicted RBP10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SLITRK4Q8IW52 837 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 RNF113BQ8IZP6 322 aaKnown RBP10.77□□□□□ -0.69
NPHP4-204ENST00000460696 BEST4Q8NFU0 473 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 NARS2Q96I59 477 aaKnown RBP10.77□□□□□ -0.69
NPHP4-204ENST00000460696 SIAEQ9HAT2 523 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 MED17Q9NVC6 651 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 ZNF69Q9UC07 566 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 PCDHGB2Q9Y5G2 931 aa10.77□□□□□ -0.69
NPHP4-204ENST00000460696 LAMA3Q16787 3333 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 H7C1C5 153 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 SNRPBP14678 240 aaKnown RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 RAB38P57729 211 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 LCN6P62502 163 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 SPEM2Q0P670 501 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 C12orf73Q69YU5 71 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 FBXO42Q6P3S6 717 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 LRFN4Q6PJG9 635 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TMEM184AQ6ZMB5 413 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 PAQR7Q86WK9 346 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 OR6C4Q8NGE1 309 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 OR8S1Q8NH09 359 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DAZLQ92904 295 aaKnown RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TCEAL2Q9H3H9 227 aaPredicted RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 COMMD9Q9P000 198 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 NEUROG3Q9Y4Z2 214 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 MYLKQ15746 1914 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 LOC100509620A0A075B734 347 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 A0A1B0GW55 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 A0A1W2PPV9 198 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 ACOD1A6NK06 481 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 C5orf67F2Z3F1 127 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 FMO6PO60774 539 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TRIM3O75382 744 aaPredicted RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L2P0CJ85 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L3P0CJ86 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L4P0CJ87 422 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L5P0CJ88 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L6P0CJ89 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4L7P0CJ90 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TGM1P22735 817 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 CFL1P23528 166 aaKnown RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 AP2S1P53680 142 aaPredicted RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 HNRNPKP61978 463 aaKnown RBP eCLIP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 IFITM3Q01628 133 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 HTR4Q13639 388 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 ZNF782Q6ZMW2 699 aaPredicted RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 UBALD2Q8IYN6 164 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 LNX2Q8N448 690 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 ARL14Q8N4G2 192 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 C19orf47Q8N9M1 422 aaKnown RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TEAD3Q99594 435 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUSP22Q9NRW4 184 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 WSB2Q9NYS7 404 aaPredicted RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DHCR7Q9UBM7 475 aaKnown RBP10.76□□□□□ -0.69
NPHP4-204ENST00000460696 DUX4Q9UBX2 424 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 PLCL2Q9UPR0 1127 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 SLC22A7Q9Y694 548 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 TRDV1A0A1B0GX56 115 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 LTBRP36941 435 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 CLDN12P56749 244 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 HYAL4Q2M3T9 481 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 C4orf46Q504U0 113 aa10.76□□□□□ -0.69
NPHP4-204ENST00000460696 ATAD3CQ5T2N8 411 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms