RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ACOT11Q8WXI4 607 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RBPMSQ93062 196 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SMIM12Q96EX1 92 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 C3orf30Q96M34 536 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AGAP4Q96P64 663 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DOK1Q99704 481 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 VPS25Q9BRG1 176 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ATG101Q9BSB4 218 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CXorf36Q9H7Y0 433 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 POLD4Q9HCU8 107 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SEMA4BQ9NPR2 832 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TPSG1Q9NRR2 321 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 C1orf109Q9NX04 203 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PTTG3PQ9NZH4 202 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 OSGIN1Q9UJX0 560 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PPIEQ9UNP9 301 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNFX1Q9P2E3 1918 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF236Q9UL36 1845 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2A25A4D2G3 310 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 NKX6-3A6NJ46 265 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CLDN25C9JDP6 229 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 H3BN98 237 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF749O43361 778 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SNAP91O60641 907 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZMPSTE24O75844 475 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SEC14L2O76054 403 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AQP8O94778 261 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SUPT7LO94864 414 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 WNT11O96014 354 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SHBGP04278 402 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ICAM1P05362 532 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RRASP10301 218 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ACP5P13686 325 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CD22P20273 847 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GCAP28676 217 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ARR3P36575 388 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 COILP38432 576 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RFC3P40938 356 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PMELP40967 661 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AQP2P41181 271 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AKR1C3P42330 323 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RBM34P42696 430 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 MAGEA3P43357 314 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RAB9AP51151 201 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PKIAP61925 76 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RPL23AP62750 156 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 NAAAQ02083 359 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TWF1Q12792 350 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 FASTKQ14296 549 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 OR4D1Q15615 310 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TBR1Q16650 682 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 COX19Q49B96 90 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AASDHQ4L235 1098 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AGKQ53H12 422 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DNLZQ5SXM8 178 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PRAMEF7Q5VXH5 474 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 C11orf63Q6NUN7 778 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TRMT10BQ6PF06 316 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 NCEH1Q6PIU2 408 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PLET1Q6UQ28 207 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RAD9BQ6WBX8 426 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RNF165Q6ZSG1 346 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GRINAQ7Z429 371 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ADCK2Q7Z695 626 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PEG10Q86TG7 708 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LDB1Q86U70 411 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CATSPER3Q86XQ3 398 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CACUL1Q86Y37 369 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEFF1Q8IYR6 380 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DNAJC22Q8N4W6 341 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 FITM2Q8N6M3 262 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CLDN22Q8N7P3 220 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LMNTD1Q8N9Z9 388 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DNAAF1Q8NEP3 725 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM185AQ8NFB2 350 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF420Q8TAQ5 688 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ITFG1Q8TB96 612 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ABHD3Q8WU67 409 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SMPDL3BQ92485 455 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LENG9Q96B70 501 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CCDC124Q96CT7 223 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 POM121L2Q96KW2 1035 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 COL21A1Q96P44 957 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 OR2V2Q96R30 315 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PAFAH2Q99487 392 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RTP3Q9BQQ7 232 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SRSF8Q9BRL6 282 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CHRDL1Q9BU40 450 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 UGT2B28Q9BY64 529 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 STRADBQ9C0K7 418 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TOR3AQ9H497 397 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 NMNAT1Q9HAN9 279 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LYRM4Q9HD34 91 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LIN7CQ9NUP9 197 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GPR83Q9NYM4 423 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 WSB2Q9NYS7 404 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF223Q9UK11 482 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 FZD4Q9ULV1 537 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PADI3Q9ULW8 664 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms