RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TEX13CA0A0J9YWL9 993 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 OR6C76A6NM76 312 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 J3QRK9 145 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FCMRO60667 390 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 WDPCPO95876 746 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 PSKH1P11801 424 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CD79AP11912 226 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 SLC26A5P58743 744 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 MEPCEQ7L2J0 689 aaKnown RBP6.85□□□□□ -1.31
SYNE1-213ENST00000448038 GALNT15Q8N3T1 639 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FTMTQ8N4E7 242 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 CNEP1R1Q8N9A8 125 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 FOXN4Q96NZ1 517 aa6.85□□□□□ -1.31
SYNE1-213ENST00000448038 F5H5K5 113 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ORC5O43913 435 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PRKNO60260 465 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MRPS14O60783 128 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 NOS1APO75052 506 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 FCER2P06734 321 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 THBS1P07996 1170 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 EIF1P41567 113 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PPP1CAP62136 330 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZXDAP98168 799 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 DHRS13Q6UX07 377 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF793Q6ZN11 406 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SPTSSAQ969W0 71 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF775Q96BV0 537 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 WDR34Q96EX3 536 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 RADILQ96JH8 1075 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 OR2A5Q96R48 311 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZPBPQ9BS86 351 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MED28Q9H204 178 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PLEK2Q9NYT0 353 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SH3BGRL2Q9UJC5 107 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PCDHGB6Q9Y5F9 930 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 LRRC37A2A6NM11 1700 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CCDC187A0A096LP49 1063 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 H0YC42 278 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 KLRC4-KLRK1H3BQV0 150 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 FXYD1O00168 92 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CHP2O43745 196 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 EIF4E2O60573 245 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 LCATP04180 440 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PGAM2P15259 253 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 FOLR1P15328 257 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MSX1P28360 303 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CXCR4P61073 352 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SMCO1Q147U7 214 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 B3GNT8Q7Z7M8 397 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM17Q86X19 198 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 NRTNQ99748 197 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ENKD1Q9H0I2 346 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 DUSP15Q9H1R2 295 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ANKRD19PQ9H560 264 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ACOT13Q9NPJ3 140 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MRPS2Q9Y399 296 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 GGT3PA6NGU5 568 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ARGFXA6NJG6 315 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MAS1P04201 325 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CDK1P06493 297 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ERCC1P07992 297 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ABOP16442 354 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ENTPD1P49961 510 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 TRA2AQ13595 282 aaKnown RBP eCLIP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 VASNQ6EMK4 673 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 UGT2A3Q6UWM9 527 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 AKAP14Q86UN6 197 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 GRAMD2AQ8IUY3 354 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 TIGD4Q8IY51 512 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SPRYD4Q8WW59 207 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 NIPSNAP1Q9BPW8 284 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PIGQQ9BRB3 760 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ULBP2Q9BZM5 246 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SEMA4GQ9NTN9 838 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 VNN3Q9NY84 501 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CTSFQ9UBX1 484 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ASB4Q9Y574 426 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 FAM172BPA6NC97 362 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 PLATP00750 562 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 IGHV4-34P06331 123 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 CHRM4P08173 479 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF12P17014 697 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ADH7P40394 386 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 FRKP42685 505 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 GNG2P59768 71 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 GMFBP60983 142 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SLC35A1P78382 337 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 RAE1P78406 368 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ILKQ13418 452 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 KIAA0040Q15053 153 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 SMN1Q16637 294 aaKnown RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 MOGQ16653 247 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 DHRS4L2Q6PKH6 230 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF782Q6ZMW2 699 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ABHD12BQ7Z5M8 362 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 LIX1LQ8IVB5 337 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 OR5W2Q8NH69 310 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 HMGCLL1Q8TB92 370 aa6.84□□□□□ -1.31
SYNE1-213ENST00000448038 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-213ENST00000448038 HOXB13Q92826 284 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms