RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SIGLEC5O15389 551 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 GYG2O15488 501 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 FGF17O60258 216 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 TBX19O60806 448 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CDC123O75794 336 aaPredicted RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 RHOBTB1O94844 696 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ANP32DO95626 131 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CLPTM1O96005 669 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PRSS1P07477 247 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 BPGMP07738 259 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MYL2P10916 166 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MLNP12872 115 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 RPS2P15880 293 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 PGAM1P18669 254 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PTPN4P29074 926 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PTPN6P29350 595 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MAP2K2P36507 400 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 DLSTP36957 453 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PTGFRP43088 359 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MAGEA3P43357 314 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SLC1A6P48664 564 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 FHITP49789 147 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 DAOAP59103 153 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 TPI1P60174 286 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ERVK11-1P61568 191 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 RPS4XP62701 263 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 CRADDP78560 199 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CDK16Q00536 496 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SPIBQ01892 262 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 BST1Q10588 318 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CHIT1Q13231 466 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 STX3Q13277 289 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 NFATC2Q13469 925 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PAFAH1B3Q15102 231 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 P2RY14Q15391 338 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZSWIM7Q19AV6 140 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZNF311Q5JNZ3 666 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SPANXN3Q5MJ09 141 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SPATA46Q5T0L3 261 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 N4BP2L1Q5TBK1 243 aaPredicted RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 C1orf189Q5VU69 101 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SYPL2Q5VXT5 272 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 STEAP4Q687X5 459 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SLC35E4Q6ICL7 350 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 TIFABQ6ZNK6 161 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CLEC20AQ6ZU45 233 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PAQR9Q6ZVX9 377 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CHMP1BQ7LBR1 199 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PTAR1Q7Z6K3 402 aaPredicted RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 VASH2Q86V25 355 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 CRLF3Q8IUI8 442 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 PSTKQ8IV42 348 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 NUDCD3Q8IVD9 361 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZNF567Q8N184 647 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 TMEM178AQ8NBL3 297 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZNF485Q8NCK3 441 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 OR10G8Q8NGN5 311 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 OR2T11Q8NH01 316 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 WDR36Q8NI36 951 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 SENP8Q96LD8 212 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 AGAP3Q96P47 875 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 DUX3Q96PT4 197 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZSCAN5AQ9BUG6 496 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 WRAP53Q9BUR4 548 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 TBC1D10AQ9BXI6 508 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MRPL13Q9BYD1 178 aaKnown RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 KCNK13Q9HB14 408 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SAR1AQ9NR31 198 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 FBXO6Q9NRD1 293 aaPredicted RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 RDH8Q9NYR8 311 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 MARCOQ9UEW3 520 aaPredicted RBP3.54□□□□□ -1.84
VPS29-202ENST00000447578 MIOXQ9UGB7 285 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 LNPEPQ9UIQ6 1025 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ZNF175Q9Y473 711 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 ANGPTL3Q9Y5C1 460 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SNX10Q9Y5X0 201 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SF3B1O75533 1304 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS29-202ENST00000447578 PTPRFP10586 1907 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 C15orf38-AP3S2A0A0A6YYH1 394 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 MYBPHLA2RUH7 354 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 E7ENQ6 273 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ANHXE9PGG2 379 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 SPECC1L-ADORA2AF8WAN1 911 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 FAM72CH0Y354 149 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 SGK494L7N484 410 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 UBXN8O00124 270 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 TRAFD1O14545 582 aaPredicted RBP3.53□□□□□ -1.84
VPS29-202ENST00000447578 BIRC5O15392 142 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CFLARO15519 480 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CCDC22O60826 627 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ANXA9O76027 345 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 IL1BP01584 269 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 HMBSP08397 361 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 ERVK-10P10266 1014 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 RPA2P15927 270 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 TSPAN8P19075 237 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 C4BPBP20851 252 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 CALB2P22676 271 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 HTR2AP28223 471 aa3.53□□□□□ -1.84
VPS29-202ENST00000447578 PBLDP30039 288 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms