RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZBTB20Q9HC78 741 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 EVLQ9UI08 416 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 A0A1B0GTW7 788 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KCNQ2O43526 872 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MRPL19P49406 292 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 UBE2G2P60604 165 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MAP2K5Q13163 448 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KIAA0141Q14154 515 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 TMEM236Q5W0B7 351 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 LCTLQ6UWM7 567 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 OR51A2Q8NGJ7 313 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 HLA-CQ95604 372 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NXF2Q9GZY0 626 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 PADI1Q9ULC6 663 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 OR1A2Q9Y585 309 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3DA0A087WVF3 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3IA0A087WXS9 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3LB9A6J9 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MAFKO60675 156 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 RPP14O95059 124 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 DDAH2O95865 285 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KNG1P01042 644 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ORM1P02763 201 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3HP0C7X1 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MEP1BQ16820 701 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3CQ6IPX1 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 FAHD2BQ6P2I3 314 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 ADGRG3Q86Y34 549 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TBC1D3Q8IZP1 549 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 NTNG2Q96CW9 530 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 FAHD2AQ96GK7 314 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KLRF1Q9NZS2 232 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NSG2Q9Y328 171 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MTMR11A4FU01 709 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TCRBP04435 133 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 GRPRP30550 384 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 CNR2P34972 360 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TRHRP34981 398 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 SP2Q02086 613 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ENPP6Q6UWR7 440 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 DPY19L2P2Q6ZN68 376 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ST8SIA4Q92187 359 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 IL36AQ9UHA7 158 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SLC23A1Q9UHI7 598 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 MEIS3P1A6NDR6 274 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 NIPSNAP2O75323 286 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 HPNP05981 417 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 KIAA1024LP59773 190 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 STEAP3Q658P3 488 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TMEM190Q8WZ59 177 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 EEF1E1-BLOC1S5C9J1V9 151 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 EDN1P05305 212 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ACRV1P26436 265 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 DUSP3P51452 185 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 IRF9Q00978 393 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TMEM115Q12893 351 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 ZNF322Q6U7Q0 402 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 TMPRSS7Q7RTY8 843 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 HSD17B13Q7Z5P4 300 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 SPICQ8N5J4 248 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 PAQR8Q8TEZ7 354 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 CLIP3Q96DZ5 547 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SLC30A3Q99726 388 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TIAM2Q8IVF5 1701 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 FER1L6Q2WGJ9 1857 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 RTCAO00442 366 aaKnown RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 DVL2O14641 736 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ICAM2P13598 275 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 TPPP2P59282 170 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 ZNF776Q68DI1 518 aaPredicted RBP6.75□□□□□ -1.33
VPS53-204ENST00000437048 CLEC20AQ6ZU45 233 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 OR10G6Q8NH81 332 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SEH1LQ96EE3 360 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 GJD2Q9UKL4 321 aa6.75□□□□□ -1.33
VPS53-204ENST00000437048 SERPINA7P05543 415 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 HTR1FP30939 366 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 AHRP35869 848 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SLC22A24Q8N4F4 322 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR6K3Q8NGY3 331 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 NECTIN4Q96NY8 510 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 METTL17Q9H7H0 456 aaPredicted RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 MSRAQ9UJ68 235 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 DOCK7Q96N67 2140 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MDC1Q14676 2089 aaKnown RBP6.74□□□□□ -1.33
VPS53-204ENST00000437048 KDM4FA0A1W2PPD8 638 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 HMSDA8MTL9 139 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SELPP16109 830 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GDF10P55107 478 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 STK11Q15831 433 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 RCBTB1Q8NDN9 531 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR13C8Q8NGS7 320 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 OR6S1Q8NH40 331 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 TSLPQ969D9 159 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 WWTR1Q9GZV5 400 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 SPNS1Q9H2V7 528 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 PARPBPQ9NWS1 579 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CXorf51AA0A1B0GTR3 108 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 GLB1P16278 677 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 MMP15P51511 669 aa6.74□□□□□ -1.33
VPS53-204ENST00000437048 CTSL3PQ5NE16 218 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms