RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 HRASLSQ9HDD0 168 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 PLCXD1Q9NUJ7 323 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 SIDT1Q9NXL6 827 aaKnown RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 PIK3C2AO00443 1686 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 CENPBD1B2RD01 187 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 IKZF1Q13422 519 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 CYS1Q717R9 158 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 MEPCEQ7L2J0 689 aaKnown RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 TIMM29Q9BSF4 260 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 TUBG2Q9NRH3 451 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 ADAM12O43184 909 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 AIFM1O95831 613 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 NFATC3Q12968 1075 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 TANGO2Q6ICL3 276 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 TSSK4Q6SA08 328 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 GDPD1Q8N9F7 314 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 HYLS1Q96M11 299 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 NUBP2Q9Y5Y2 271 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 HLA-FP30511 346 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 CLDN6P56747 220 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 OR4N2Q8NGD1 307 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 CMSS1Q9BQ75 279 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 WDR83Q9BRX9 315 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 CHATP28329 748 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 NUDT1P36639 197 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 CXADRP78310 365 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 FXNQ16595 210 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PROX2Q3B8N5 592 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 TMEM71Q6P5X7 295 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 OR13C2Q8NGS9 318 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PHOSPHO2Q8TCD6 241 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PAQR8Q8TEZ7 354 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 TRUB1Q8WWH5 349 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SLC6A17Q9H1V8 727 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 GPATCH2Q9NW75 528 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 RAB27BO00194 218 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PPP6CO00743 305 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 GPR75O95800 540 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 EGFP01133 1207 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PRLHRP49683 370 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SIX1Q15475 284 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SLC9A3R2Q15599 337 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 AADACL3Q5VUY0 350 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 TMEM64Q6YI46 380 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 AAED1Q7RTV5 226 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 ADIPOR2Q86V24 386 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 DNAJC22Q8N4W6 341 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 OR4F15Q8NGB8 312 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 MRPL38Q96DV4 380 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 COQ10AQ96MF6 247 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 GAREM1Q9H706 876 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 MED20Q9H944 212 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 FANCGO15287 622 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 RGRP47804 291 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 BEX5Q5H9J7 111 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 MRPL2Q5T653 305 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 PTCRAQ6ISU1 281 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 MIB2Q96AX9 1013 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 C12orf49Q9H741 205 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SDR39U1Q9NRG7 319 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 DCAF13Q9NV06 445 aaKnown RBP14.37□□□□□ -0.11
PTPRF-206ENST00000429895 EMC9Q9Y3B6 208 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 H3BNC9 293 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 KITLGP21583 273 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 C9orf152Q5JTZ5 239 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SLC35D2Q76EJ3 337 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SIMC1Q8NDZ2 872 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 SORCS2Q96PQ0 1159 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 METTL9Q9H1A3 318 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 DUSP13Q9UII6 198 aa14.37□□□□□ -0.11
PTPRF-206ENST00000429895 LOC285095A0A1B0GVY8 99 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 TCN2P20062 427 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 NKX6-1P78426 367 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 ZNF684Q5T5D7 378 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 CST9LP1Q5W188 147 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 GOLM1Q8NBJ4 401 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 DHCR7Q9UBM7 475 aaKnown RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 RASD1Q9Y272 281 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 SULT1B1O43704 296 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 EN2P19622 333 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 C12orf45Q8N5I9 185 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 OR6F1Q8NGZ6 308 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 FBXO27Q8NI29 283 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 ZNF566Q969W8 418 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 SGK3Q96BR1 496 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 ZBTB8AQ96BR9 441 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 SURF4O15260 269 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 GALR3O60755 368 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 SLC34A2O95436 690 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 ITGB2P05107 769 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 EVI2BP34910 448 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 DCDP81605 110 aaKnown RBP14.36□□□□□ -0.11
PTPRF-206ENST00000429895 LTBQ06643 244 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 PDE7AQ13946 482 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 MFSD9Q8NBP5 474 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 STEAP2Q8NFT2 490 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 TMIGD2Q96BF3 282 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 PRRT1Q99946 306 aa14.36□□□□□ -0.11
PTPRF-206ENST00000429895 WWTR1Q9GZV5 400 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms