RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NUP54Q7Z3B4 507 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TOR1AIP2Q8NFQ8 470 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OR4K5Q8NGD3 323 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OR52P1PQ8NH57 321 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 GNPDA2Q8TDQ7 276 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 HAS2Q92819 552 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 MARVELD3Q96A59 401 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SPACA9Q96E40 222 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ABHD17AQ96GS6 310 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ARHGAP9Q9BRR9 750 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 G6PC3Q9BUM1 346 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 POLR2J2Q9GZM3 115 aaKnown RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SLC25A19Q9HC21 320 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 HPF1Q9NWY4 346 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 MGAQ8IWI9 3026 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ZZEF1O43149 2961 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OR6C70A6NIJ9 312 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 H3BN98 237 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 M0R3G1 203 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 STX11O75558 287 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TP53P04637 393 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 THBS1P07996 1170 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 STSP08842 583 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 C21orf33P30042 268 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 CASRP41180 1078 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TMED10P49755 219 aaKnown RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 NUDT6P53370 316 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ARG2P78540 354 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ST3GAL3Q11203 375 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ST3GAL4Q11206 333 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OCLNQ16625 522 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 DGUOKQ16854 277 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TIGD6Q17RP2 521 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 C11orf91Q3C1V1 193 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 EIPR1Q53HC9 387 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SLC25A30Q5SVS4 291 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SPINK14Q6IE38 97 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 FRRS1Q6ZNA5 592 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ZAR1Q86SH2 424 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 VRK2Q86Y07 508 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 GPALPP1Q8IXQ4 340 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 PEX5LQ8IYB4 626 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OR8J1Q8NGP2 316 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 PMM1Q92871 262 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SGCZQ96LD1 299 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 RNF32Q9H0A6 362 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 RACGAP1Q9H0H5 632 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 EVA1AQ9H8M9 152 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TBC1D23Q9NUY8 699 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 LRFN1Q9P244 771 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF232Q9UNY5 417 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF443Q9Y2A4 671 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 MAP1BP46821 2468 aaKnown RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 DSPP15924 2871 aaKnown RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 LOC400499M0QZD8 3231 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 A0A1B0GVG6 124 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 K7EM74 188 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 AP3D1O14617 1153 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 CYP7B1O75881 506 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 FAM87AP0C7U9 286 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 ADORA3P0DMS8 318 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 UGT2B10P36537 528 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 EFR3AQ14156 821 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 LARS2Q15031 903 aaKnown RBP12.25□□□□□ -0.45
LIMS1-204ENST00000409441 NTRK2Q16620 822 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.25□□□□□ -0.45
LIMS1-204ENST00000409441 IGFL3Q6UXB1 125 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 ZER1Q7Z7L7 766 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF227Q86WZ6 799 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 DND1Q8IYX4 353 aaKnown RBP12.25□□□□□ -0.45
LIMS1-204ENST00000409441 CYP4Z2PQ8N1L4 340 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 OR10G3Q8NGC4 313 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 POLDIP3Q9BY77 421 aaKnown RBP12.25□□□□□ -0.45
LIMS1-204ENST00000409441 MKLN1Q9UL63 735 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 WDR45Q9Y484 360 aa12.25□□□□□ -0.45
LIMS1-204ENST00000409441 OR5H15A6NDH6 313 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 M0R082 166 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TP53I11O14683 189 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 NEURL1O76050 574 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 OR5F1O95221 314 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 ZIC2O95409 532 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SOX14O95416 240 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 PDGFAP04085 211 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 GUSBP08236 651 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 NR4A1P22736 598 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 RGS8P57771 180 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TUBA1BP68363 451 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 OR1C1Q15619 314 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 GPR68Q15743 365 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 RNLSQ5VYX0 342 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SLC22A10Q63ZE4 541 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TYW3Q6IPR3 259 aaKnown RBP12.24□□□□□ -0.45
LIMS1-204ENST00000409441 RTL4Q6ZR62 310 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TUBA1AQ71U36 451 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 SLC46A3Q7Z3Q1 461 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 MDGA2Q7Z553 956 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 ZADH2Q8N4Q0 377 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 OR4C3Q8NH37 302 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 DYNC2LI1Q8TCX1 351 aa12.24□□□□□ -0.45
LIMS1-204ENST00000409441 TM9SF4Q92544 642 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms