RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 LIX1LQ8IVB5 337 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SPTSSAQ969W0 71 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 TBC1D20Q96BZ9 403 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SORCS2Q96PQ0 1159 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SCGB2A1O75556 95 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 LCATP04180 440 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ACSM1Q08AH1 577 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 HNF4GQ14541 408 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 RAET1LQ5VY80 246 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM88Q6PEY1 159 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 OR9A2Q8NGT5 310 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GPR78Q96P69 363 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 MCOLN1Q9GZU1 580 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 MED20Q9H944 212 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SLC39A9Q9NUM3 307 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TRBV4-1A0A0J9YWV2 114 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 OR6C76A6NM76 312 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 CEBPZOSA8MTT3 80 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 JUNBP17275 347 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 HRH2P25021 359 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 HOXD11P31277 338 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 LIPAP38571 399 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 C1orf220Q5T0J3 134 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 BRICD5Q6PL45 260 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SLC35F3Q8IY50 421 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 C1orf87Q8N0U7 546 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GPR137CQ8N3F9 429 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 CD200R1Q8TD46 325 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 PARP12Q9H0J9 701 aaKnown RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 DUOX1Q9NRD9 1551 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 LGALS8O00214 317 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TGOLN2O43493 480 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 KLK3P07288 261 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TRAPPC2P0DI81 140 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TRAPPC2BP0DI82 140 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 RAP1AP62834 184 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 MFGE8Q08431 387 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 FAM110CQ1W6H9 321 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 PDLIM3Q53GG5 364 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 C6orf132Q5T0Z8 1188 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SYT6Q5T7P8 510 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 EEF1A1P5Q5VTE0 462 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 OGFOD3Q6PK18 319 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 VASH1Q7L8A9 365 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 LMX1AQ8TE12 382 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 FOXN4Q96NZ1 517 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 DEFB118Q96PH6 123 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 UHRF2Q96PU4 802 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 CLMPQ9H6B4 373 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF629Q9UEG4 869 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 KITLGP21583 273 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ETV6P41212 452 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TAS1R3Q7RTX0 852 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GRAMD2AQ8IUY3 354 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 IL1F10Q8WWZ1 152 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 BRI3BPQ8WY22 251 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 C22orf15Q8WYQ4 148 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TM9SF4Q92544 642 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 DVL3Q92997 716 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 MS4A4EQ96PG1 132 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SLC12A9Q9BXP2 914 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 NPIPA5A0A0B4J1W7 369 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ANXA7P20073 488 aaKnown RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 TAS2R46P59540 309 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GBX1Q14549 363 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ETFRF1Q6IPR1 90 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 OR6T1Q8NGN1 323 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SHISA4Q96DD7 197 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 BTF3L4Q96K17 158 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 NTMT1Q9BV86 223 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF286AQ9HBT8 521 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 PIRO00625 290 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 SHC2P98077 582 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GLO1Q04760 184 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 CAMK2DQ13557 499 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 VAMP3Q15836 100 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 ENTPD8Q5MY95 495 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 DBX2Q6ZNG2 339 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 GPRIN1Q7Z2K8 1008 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 UEVLDQ8IX04 471 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 CPNE4Q96A23 557 aaPredicted RBP11.1□□□□□ -0.63
SYNPO-202ENST00000394243 DDIT4LQ96D03 193 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 HHLA2Q9UM44 414 aa11.1□□□□□ -0.63
SYNPO-202ENST00000394243 YY2O15391 372 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF623O75123 536 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 RNH1P13489 461 aaKnown RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 BMP1P13497 986 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 RNF212Q495C1 297 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 PHYHD1Q5SRE7 291 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TMEM244Q5VVB8 128 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 LRRC56Q8IYG6 542 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 CSNK1A1LQ8N752 337 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 CDS1Q92903 461 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 BAZ2AQ9UIF9 1905 aaKnown RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 TRABD2BA6NFA1 517 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 BTG1P62324 171 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF776Q68DI1 518 aaPredicted RBP11.09□□□□□ -0.63
SYNPO-202ENST00000394243 DPPA4Q7L190 304 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 GDPD3Q7L5L3 318 aa11.09□□□□□ -0.63
SYNPO-202ENST00000394243 POFUT1Q9H488 388 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms