RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 OSTF1Q92882 214 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ABTB1Q969K4 478 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 MGLLQ99685 303 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 MMP25Q9NPA2 562 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 MYOTQ9UBF9 498 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TCFL5Q9UL49 500 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 HS3ST3B1Q9Y662 390 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 PMF1-BGLAPU3KQ54 211 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TEX51A0A1B0GUA7 166 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 METTL15A6NJ78 407 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 DKK1O94907 266 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 TP53P04637 393 aaPredicted RBP16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 FTH1P19P0C7X4 201 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 COX6A1P12074 109 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 FUT4P22083 530 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 CD82P27701 267 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 EVI2BP34910 448 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 OMPP47874 163 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 PCYT1AP49585 367 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 CDK5Q00535 292 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 SKP2Q13309 424 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 ITGADQ13349 1161 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 MRGPREQ86SM8 312 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 TMPRSS12Q86WS5 348 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 CLDN22Q8N7P3 220 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 TMEM255BQ8WV15 326 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 RPL3LQ92901 407 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 FAM46AQ96IP4 442 aaKnown RBP16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 PRSS27Q9BQR3 290 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 MND1Q9BWT6 205 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 MROQ9BYG7 248 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 SPRY4Q9C004 299 aa16.66■□□□□ 0.26
CCDC88C-203ENST00000389856 hCG_2014768A0A024R1R8 64 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PRKNO60260 465 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 THY1P04216 161 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 SCG5P05408 212 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 GIPRP48546 466 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 CCR4P51679 360 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PPP5CP53041 499 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PLAURQ03405 335 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PRKCDQ05655 676 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 INAQ16352 499 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 KLHL22Q53GT1 634 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PRICKLE2Q7Z3G6 844 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 POGLUT1Q8NBL1 392 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 PROKR2Q8NFJ6 384 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 IMMP1LQ96LU5 166 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 SLC19A3Q9BZV2 496 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 DSN1Q9H410 356 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 C12orf10Q9HB07 376 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 ZBTB20Q9HC78 741 aaPredicted RBP16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 SDHAF3Q9NRP4 125 aa16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 MRPS18AQ9NVS2 196 aaKnown RBP16.65■□□□□ 0.26
CCDC88C-203ENST00000389856 WWP2O00308 870 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 TNFSF15O95150 251 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 PGCP20142 388 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 CTBP2P56545 445 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 C1DQ13901 141 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 GINS1Q14691 196 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 CD226Q15762 336 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 SLC43A2Q8N370 569 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 GATSQ8NAP1 163 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF563Q8TA94 476 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 IL4I1Q96RQ9 567 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 TAPBPLQ9BX59 468 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 FLRT3Q9NZU0 649 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 DIMT1Q9UNQ2 313 aaKnown RBP16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 CARD8Q9Y2G2 431 aa16.64■□□□□ 0.25
CCDC88C-203ENST00000389856 ISPDA4D126 451 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 STMND1H3BQB6 276 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TP53I11O14683 189 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 HCRTR2O43614 444 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 FADS1O60427 444 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 LYPD3O95274 346 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 BMP4P12644 408 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 IFI30P13284 250 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SOX6P35712 828 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 EFNB1P98172 346 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF91Q05481 1191 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 DNASE1L3Q13609 305 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 CBFBQ13951 182 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TMPRSS11FQ6ZWK6 438 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TIPARPQ7Z3E1 657 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 RAB43Q86YS6 212 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OR11G2Q8NGC1 345 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 OR9Q1Q8NGQ5 310 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 THAP3Q8WTV1 239 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SLC38A2Q96QD8 506 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 TSSK6Q9BXA6 273 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 LSM2Q9Y333 95 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 PEX16Q9Y5Y5 336 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 UNC119BA6NIH7 251 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 ELOA3DA6NLF2 546 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 RCBTB2O95199 551 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SOX14O95416 240 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 HPP00738 406 aa16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 DBTP11182 482 aaKnown RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 SUMO3P55854 103 aaPredicted RBP16.63■□□□□ 0.25
CCDC88C-203ENST00000389856 CLDN6P56747 220 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms