RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 DNMT3BQ9UBC3 853 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 DKKL1Q9UK85 242 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 IFITM5A6NNB3 132 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 C1orf196B1AJZ1 125 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 PPP1R2P9O14990 202 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SMIM18P0DKX4 95 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TRHRP34981 398 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CCR4P51679 360 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 LSM3P62310 102 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 HNRNPA0Q13151 305 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 COL26A1Q96A83 441 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ZPBPQ9BS86 351 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MAGEB4O15481 346 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF91Q05481 1191 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CNIH2Q6PI25 160 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ARIH2OSQ8N7S6 290 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SMIM19Q96E16 107 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 OR2M4Q96R27 311 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 GAL3ST1Q99999 423 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 OR51I1Q9H343 314 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 RGS17Q9UGC6 210 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 HEMK1Q9Y5R4 338 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 J3QLW9 94 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 DUS4LO95620 317 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF19P17023 458 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CD1CP29017 333 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 OR1M1Q8NGA1 313 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 OR8K3Q8NH51 312 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 PIGQQ9BRB3 760 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 UBR1Q8IWV7 1749 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CXADRP78310 365 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 RSPO2Q6UXX9 243 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 KCNJ16Q9NPI9 418 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 C1orf123Q9NWV4 160 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 DHDHQ9UQ10 334 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SOX18P35713 384 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 KCNJ3P48549 501 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TMEM200AQ86VY9 491 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 A0A0D9SEW6 157 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SBK2P0C263 348 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 PCMT1P22061 227 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SLC26A5P58743 744 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CBFBQ13951 182 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SYT13Q7L8C5 426 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 LHFPL5Q8TAF8 219 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 GHSRQ92847 366 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SIPA1Q96FS4 1042 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TLR9Q9NR96 1032 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 B4GALT6Q9UBX8 382 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 FBXO10Q9UK96 956 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 POLR1DQ9Y2S0 133 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 COL14A1Q05707 1796 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SLC9B1P1A6NJY1 282 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CCR5P51681 352 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ABHD17CQ6PCB6 329 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CATSPERDQ86XM0 798 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF480Q8WV37 535 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SEMA6CQ9H3T2 930 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 AGRPO00253 132 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 IGHA1P01876 353 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SLCO4A1Q96BD0 722 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 WDR92Q96MX6 357 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 DLK1P80370 383 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MIDNQ504T8 468 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MRGPREQ86SM8 312 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 DCBLD2Q96PD2 775 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 WBP1LQ9NX94 342 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 STEAP1Q9UHE8 339 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 IKZF2Q9UKS7 526 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MEIKINA0A087WXM9 373 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 HMGN2P05204 90 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CPMP14384 443 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ELK1P19419 428 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ALG10BQ5I7T1 473 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ARHGAP40Q5TG30 622 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 KCTD9Q7L273 389 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TECPR1Q7Z6L1 1165 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ZNF433Q8N7K0 673 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 GTF3AQ92664 365 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 FKRPQ9H9S5 495 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 LYRM2Q9NU23 88 aaPredicted RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MT-ND4LP03901 98 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 MMP16P51512 607 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TXNDC8Q6A555 127 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 HEPHL1Q6MZM0 1159 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 NT5CQ8TCD5 201 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 PTCHD1Q96NR3 888 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 HIPK2Q9H2X6 1198 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 ABCD3P28288 659 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 IRS1P35568 1242 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SLC30A6Q6NXT4 461 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 EDNRAP25101 427 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 CLDN20P56880 219 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 GRB2P62993 217 aaKnown RBP4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TMEM225Q6GV28 225 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 SUCNR1Q9BXA5 334 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 TUBA4BQ9H853 241 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 C2orf42Q9NWW7 574 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 M0QZK8 103 aa4.6□□□□□ -1.67
PCDH9-201ENST00000377861 GGCTO75223 188 aaKnown RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms