RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LRRC3BQ96PB8 259 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CMSS1Q9BQ75 279 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ITPAQ9BY32 194 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 XYLT2Q9H1B5 865 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CDCP1Q9H5V8 836 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CHODLQ9H9P2 273 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OSGIN1Q9UJX0 560 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NDRG4Q9ULP0 352 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MMP17Q9ULZ9 603 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HEATR5BQ9P2D3 2071 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NRKQ7Z2Y5 1582 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TRBV2A0A0J9YWF9 115 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PDLIM1O00151 329 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FMO6PO60774 539 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MMP7P09237 267 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MC5RP33032 325 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ACVRL1P37023 503 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DAOAP59103 153 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RPS13P62277 151 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TAF10Q12962 218 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 KHDC1Q4VXA5 237 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF14Q5SWL7 426 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HACD4Q5VWC8 232 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF13Q5VWM6 474 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMED8Q6PL24 325 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CNTN4Q8IWV2 1026 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CMTM4Q8IZR5 234 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 GDPD1Q8N9F7 314 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 BHLHE23Q8NDY6 225 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR4S1Q8NGB4 309 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ACTRT1Q8TDG2 376 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM40Q8WWA1 233 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TFAP2BQ92481 460 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 IRF7Q92985 503 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR4K3Q96R72 315 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MYADMQ96S97 322 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 EGLN3Q9H6Z9 239 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 AAMDCQ9H7C9 122 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR1A1Q9P1Q5 309 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TCAF1Q9Y4C2 921 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ENPP4Q9Y6X5 453 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FAM24AA6NFZ4 105 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SULT2B1O00204 365 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 WNT9AO14904 365 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR7C2O60412 319 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 FAM155BO75949 473 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR2J2O76002 312 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 AIFM1O95831 613 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 AMY2AP04746 511 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ACVR1BP36896 505 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 NAA20P61599 178 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 EXT1Q16394 746 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ELFN2Q5R3F8 820 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF626Q68DY1 528 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SLC18B1Q6NT16 456 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CEACAM20Q6UY09 585 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 HMGN2P46Q86SG4 172 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 TCEAL8Q8IYN2 117 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 BATF2Q8N1L9 274 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 KDM8Q8N371 416 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 KREMEN2Q8NCW0 462 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR13G1Q8NGZ3 307 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 HAS1Q92839 578 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SLC35C1Q96A29 364 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ATG101Q9BSB4 218 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CABLES2Q9BTV7 478 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CTDSP1Q9GZU7 261 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 WDR13Q9H1Z4 485 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 AGO3Q9H9G7 860 aaKnown RBP4.36□□□□□ -1.71
SCN1A-202ENST00000375405 AMBNQ9NP70 447 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 DMRT3Q9NQL9 472 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 NLGN3Q9NZ94 848 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SLC2A6Q9UGQ3 507 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 BCORL1Q5H9F3 1711 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 BIVM-ERCC5R4GMW8 1640 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ANHXE9PGG2 379 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 ARHGAP33O14559 1287 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 XRCC2O43543 280 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 TK1P04183 234 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 T-ENOLP0DO92 83 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 LIPCP11150 499 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PBX3P40426 434 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PPOXP50336 477 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 GDF10P55107 478 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PAFAH1B2P68402 229 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 DEFA6Q01524 100 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PON2Q15165 354 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PCK2Q16822 640 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 RTL8BQ17RB0 113 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 PPM1JQ5JR12 505 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 DCAF12Q5T6F0 453 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM244Q5VVB8 128 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 Q6ZN92 141 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 UBE3DQ7Z6J8 389 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 CUZD1Q86UP6 607 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR8I2Q8N0Y5 310 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 BEND2Q8NDZ0 799 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 OR10Z1Q8NGY1 313 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 SECTM1Q8WVN6 248 aa4.36□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM239Q8WW34 195 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms