RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RAP2BP61225 183 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GLO1Q04760 184 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FOXL1Q12952 345 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 C1QTNF12Q5T7M4 302 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC18B1Q6NT16 456 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC16A12Q6ZSM3 486 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 LSRQ86X29 649 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 GOLM1Q8NBJ4 401 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR4M1Q8NGD0 313 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR13G1Q8NGZ3 307 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FGF14Q92915 247 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TMEM230Q96A57 120 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GIMAP5Q96F15 307 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 PERPQ96FX8 193 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SFXN3Q9BWM7 321 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SMPD3Q9NY59 655 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 HDGFL3Q9Y3E1 203 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TRGV10A0A0A0MS01 117 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 EFCAB10A6NFE3 127 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CXCR6O00574 342 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 LIASO43766 372 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PEX11AO75192 247 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HNRNPCP07910 306 aaKnown RBP eCLIP3.79□□□□□ -1.8
USH2A-202ENST00000366942 SLC2A5P22732 501 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HLCSP50747 726 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HMGA2P52926 109 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RRAS2P62070 204 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 OLR1P78380 273 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 APOFQ13790 326 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GPR19Q15760 415 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZNF77Q15935 545 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 IZUMO4Q1ZYL8 232 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PDZK1Q5T2W1 519 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GUSBP11Q6P575 273 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ANKRD46Q86W74 232 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 HS3ST5Q8IZT8 346 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 C12orf45Q8N5I9 185 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 B3GNT7Q8NFL0 401 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR4F17Q8NGA8 305 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OXNAD1Q96HP4 312 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 RAX2Q96IS3 184 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR4F4Q96R69 305 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PCDHB18PQ96TA0 734 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 JAM3Q9BX67 310 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OSBPL7Q9BZF2 842 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 NARFLQ9H6Q4 476 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GFOD1Q9NXC2 390 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PDP2Q9P2J9 529 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ACSL6Q9UKU0 697 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ITSN1Q15811 1721 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SIGLEC1Q9BZZ2 1709 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 E9PI62 339 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RIPK2O43353 540 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 LMX1BO60663 402 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CD8BP10966 210 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SHC1P29353 583 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 APOBEC3AP31941 199 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 MMP12P39900 470 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CTSKP43235 329 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GPX6P59796 221 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PSME3P61289 254 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CEBPEQ15744 281 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 VMACQ2NL98 169 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DCAF10Q5QP82 559 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 STEAP4Q687X5 459 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR4C11Q6IEV9 310 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 MRGPREQ86SM8 312 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ST8SIA4Q92187 359 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 GTF3AQ92664 365 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZBTB8AQ96BR9 441 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PIWIL1Q96J94 861 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 ZNF317Q96PQ6 595 aaPredicted RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 DDX47Q9H0S4 455 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 OR51V1Q9H2C8 321 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DNAJC18Q9H819 358 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 RXFP3Q9NSD7 469 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PPIL1Q9Y3C6 166 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SAMHD1Q9Y3Z3 626 aaKnown RBP3.79□□□□□ -1.8
USH2A-202ENST00000366942 GMEB1Q9Y692 573 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 USP3Q9Y6I4 520 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 hADV38S2A0JD32 116 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 DAPL1A0PJW8 107 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PRAMEF27A3QJZ7 478 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BBIP1A8MTZ0 92 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 B4DXG7 233 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SSX4O60224 188 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 EBLN1P0CF75 366 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ST6GAL1P15907 406 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 FCARP24071 287 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 LMO1P25800 156 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ERVK11-1P61568 191 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PMPCAQ10713 525 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BNIP2Q12982 314 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 CLVS2Q5SYC1 327 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 STAC2Q6ZMT1 411 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 PGAP1Q75T13 922 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 SPATC1Q76KD6 591 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 BIVMQ86UB2 503 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 TUSC5Q8IXB3 177 aa3.79□□□□□ -1.8
USH2A-202ENST00000366942 ENTHD1Q8IYW4 607 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms