RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 NEIL2Q969S2 332 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 OR52A5Q9H2C5 316 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 MED17Q9NVC6 651 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 CAMTA1Q9Y6Y1 1673 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 RIMBP3CA6NJZ7 1639 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 RIMBP3BA6NNM3 1639 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 RIMBP3Q9UFD9 1639 aa11.33□□□□□ -0.6
COL12A1-202ENST00000345356 LEFTY1O75610 366 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 C8AP07357 584 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 PIM1P11309 404 aaPredicted RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 EPHA1P21709 976 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 ETV5P41161 510 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 PRPS1P60891 318 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 DGCR2P98153 550 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 CLEC9AQ6UXN8 241 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 HIST2H3AQ71DI3 136 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 CDH26Q8IXH8 852 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 KLHDC8AQ8IYD2 350 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 UCN3Q969E3 161 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 OR8D2Q9GZM6 311 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 GABARAPL1Q9H0R8 117 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 RHBDD3Q9Y3P4 386 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 ANTXRLA6NF34 631 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 RGS13O14921 159 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 ELAVL4P26378 380 aaKnown RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 ARL6IP1Q15041 203 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 SGCAQ16586 387 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 UPP1Q16831 310 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 TRAPPC6BQ86SZ2 158 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 KCNRGQ8N5I3 272 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 RLIMQ9NVW2 624 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 KLRF1Q9NZS2 232 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 SURF4O15260 269 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 DUSP11O75319 330 aaKnown RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 CNOT4O95628 575 aaKnown RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 SERPINA7P05543 415 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 OR13C7P0DN81 318 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 FUT1P19526 365 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 PTGER1P34995 402 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 TPGS2Q68CL5 300 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 KIAA0907Q7Z7F0 614 aaPredicted RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 VRK2Q86Y07 508 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 OR4K17Q8NGC6 315 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 TEPSINQ96N21 525 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 OR2A14Q96R47 310 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 NMNAT2Q9BZQ4 307 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 PATZ1Q9HBE1 687 aaKnown RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 TDP1Q9NUW8 608 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 TCRBV5S1A1TA0A578 114 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 NAT2P11245 290 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 CR2P20023 1033 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 SIM1P81133 766 aaPredicted RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 FAM110CQ1W6H9 321 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 LRIF1Q5T3J3 769 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 PAQR6Q6TCH4 344 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 NIPSNAP3BQ9BS92 247 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 RBPJLQ9UBG7 517 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 ITGB2P05107 769 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 IFNGR1P15260 489 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 NME1P15531 152 aaKnown RBP11.32□□□□□ -0.6
COL12A1-202ENST00000345356 RAD52P43351 418 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 OR9A2Q8NGT5 310 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 NINJ1Q92982 152 aa11.32□□□□□ -0.6
COL12A1-202ENST00000345356 MYO18AQ92614 2054 aaKnown RBP11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SOCS6O14544 535 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SERPINA5P05154 406 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 EVX1P49640 407 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SEC13P55735 322 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SIRPAP78324 504 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SPOCK1Q08629 439 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SLC14A1Q13336 389 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF619Q8N2I2 560 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 OR52N1Q8NH53 320 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 KATNB1Q9BVA0 655 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SLC6A17Q9H1V8 727 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SLC6A14Q9UN76 642 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SLC7A11Q9UPY5 501 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 M0QYG6 137 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 OR2C1O95371 312 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 UBL4AP11441 157 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 CPN1P15169 458 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 CTSOP43234 321 aaPredicted RBP11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SPINT3P49223 89 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 FAM74A1Q5RGS3 127 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF704Q6ZNC4 412 aaPredicted RBP11.31□□□□□ -0.6
COL12A1-202ENST00000345356 TMEM179BQ7Z7N9 219 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 OPALINQ96PE5 141 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 MS4A4EQ96PG1 132 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 SEMA4CQ9C0C4 833 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 POFUT1Q9H488 388 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 C12orf10Q9HB07 376 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 ACOXLQ9NUZ1 547 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 PRSS21Q9Y6M0 314 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 A8MXE2 369 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 NUDT19A8MXV4 375 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 CCSO14618 274 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 PDX1P52945 283 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 CDK3Q00526 305 aa11.31□□□□□ -0.6
COL12A1-202ENST00000345356 COL9A2Q14055 689 aaPredicted RBP11.31□□□□□ -0.6
COL12A1-202ENST00000345356 B3GNT9Q6UX72 402 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms