RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 TMED9Q9BVK6 235 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 A0A1W2PR77 199 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 HPRP00739 348 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 PYCR1P32322 319 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 CLDN6P56747 220 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 TSPAN5P62079 268 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 SCN1BQ07699 218 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 SELPLGQ14242 412 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 MZT2BQ6NZ67 158 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 PRSS41Q7RTY9 318 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 MARCH9Q86YJ5 346 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 ACBD7Q8N6N7 88 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 SDR9C7Q8NEX9 313 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 OR11G2Q8NGC1 345 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 OR5L1Q8NGL2 311 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 CNRIP1Q96F85 164 aaPredicted RBP8.54□□□□□ -1.04
PTPRE-202ENST00000306042 SLC35A4Q96G79 324 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 ZC3HAV1LQ96H79 300 aaKnown RBP8.54□□□□□ -1.04
PTPRE-202ENST00000306042 COX4I2Q96KJ9 171 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 FBXO8Q9NRD0 319 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 ARMC1Q9NVT9 282 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 PCDHGA6Q9Y5G7 932 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 CDH10Q9Y6N8 788 aa8.54□□□□□ -1.04
PTPRE-202ENST00000306042 LOC110117498-PIK3R3F6TDL0 507 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PLOD3O60568 738 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 EFEMP2O95967 443 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 LIPCP11150 499 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 FUT4P22083 530 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 UQCRC1P31930 480 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PIGAP37287 484 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 TPTEP56180 551 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ARHGAP11BQ3KRB8 267 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PODNL1Q6PEZ8 512 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 VN1R4Q7Z5H5 301 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 MEX3DQ86XN8 651 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 RNF113BQ8IZP6 322 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OR8K3Q8NH51 312 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 MCFD2Q8NI22 146 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 FNDC8Q8TC99 324 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CNOT9Q92600 299 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 USB1Q9BQ65 265 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 SEMA4CQ9C0C4 833 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OR52D1Q9H346 318 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 DIABLOQ9NR28 239 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CHRNA9Q9UGM1 479 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 GPR52Q9Y2T5 361 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 TEX51A0A1B0GUA7 166 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 UPK1AO00322 258 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 WNT11O96014 354 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PCMT1P22061 227 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 HOXA6P31267 233 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 GMFBP60983 142 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CAMK2DQ13557 499 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CCNIQ14094 377 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 EIF2B1Q14232 305 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 C1orf140Q5VVS0 124 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ZNF425Q6IV72 752 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 VHLLQ6RSH7 139 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 RBMS3Q6XE24 437 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 IQCF1Q8N6M8 205 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 KLHL15Q96M94 604 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PAIP1Q9H074 479 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 DHDHQ9UQ10 334 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 METTL21EPA6NDL7 271 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ZNF99A8MXY4 864 aaPredicted RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 TNFRSF21O75509 655 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 HPP00738 406 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 F8A1P23610 371 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 SOX3P41225 446 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 PSMD7P51665 324 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 IDNKQ5T6J7 187 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 BCL2L15Q5TBC7 163 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ASB18Q6ZVZ8 466 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 KRT74Q7RTS7 529 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OLIG3Q7RTU3 272 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 RETREG3Q86VR2 466 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 GPALPP1Q8IXQ4 340 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ZNF687Q8N1G0 1237 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 HOXB13Q92826 284 aaPredicted RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 C11orf24Q96F05 449 aaPredicted RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CLCC1Q96S66 551 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 TMEM38AQ9H6F2 299 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OLAHQ9NV23 265 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 TTC28Q96AY4 2481 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 IDH3BO43837 385 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 SNAP29O95721 258 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 SOD1P00441 154 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 NID1P14543 1247 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CBX5P45973 191 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 IST1P53990 364 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 SELENBP1Q13228 472 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 FAM69AQ5T7M9 428 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OGFOD3Q6PK18 319 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ZNF627Q7L945 461 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 LHFPL3Q86UP9 236 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 CPOQ8IVL8 374 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 LSM14AQ8ND56 463 aaKnown RBP8.53□□□□□ -1.04
PTPRE-202ENST00000306042 OR9K2Q8NGE7 335 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 ASB5Q8WWX0 329 aa8.53□□□□□ -1.04
PTPRE-202ENST00000306042 MAELQ96JY0 434 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms