RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 ALDOCP09972 364 aaKnown RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 IL32P24001 234 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 EDNRAP25101 427 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 IL12AP29459 219 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 RYKP34925 604 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 CHI3L1P36222 383 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 APOBEC1P41238 236 aaKnown RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 OR3A2P47893 321 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 PTH2RP49190 550 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 DIO1P49895 249 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 KHKP50053 298 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 NME5P56597 212 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 PLAURQ03405 335 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 CHRNEQ04844 493 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 LTBQ06643 244 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 RASGEF1BQ0VAM2 473 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 TAB1Q15750 504 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 SYT14P1Q58G82 188 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 HHATQ5VTY9 493 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ADAM5Q6NVV9 412 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 Q6ZT83 130 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 Q71RC1 249 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 SPATA19Q7Z5L4 167 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 MTDHQ86UE4 582 aaKnown RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 RNF130Q86XS8 419 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ADGRG3Q86Y34 549 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ZNF619Q8N2I2 560 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ZNF611Q8N823 705 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 LILRB1Q8NHL6 650 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 RAB3IL1Q8TBN0 382 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 SLC25A43Q8WUT9 341 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 KISS1RQ969F8 398 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 ZNF775Q96BV0 537 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 COX4I2Q96KJ9 171 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 Q96MF0 132 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 TRNT1Q96Q11 434 aaKnown RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 WDR55Q9H6Y2 383 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 CTPS2Q9NRF8 586 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ZNF701Q9NV72 531 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 AIG1Q9NVV5 245 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 THAP1Q9NVV9 213 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 MARCOQ9UEW3 520 aaPredicted RBP8.62□□□□□ -1.03
VPS41-201ENST00000265745 GPR45Q9Y5Y3 372 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 ARID1AO14497 2285 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 CSPG4Q6UVK1 2322 aa8.62□□□□□ -1.03
VPS41-201ENST00000265745 IGKV3D-15A0A087WSY6 115 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 TRIM64A6NGJ6 449 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 TRIM64BA6NI03 449 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 AGAP5A6NIR3 686 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 CLDN24A6NM45 220 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 FAM171A2A8MVW0 826 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 SULT2B1O00204 365 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 HDAC3O15379 428 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 SNNO75324 88 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 CNOT4O95628 575 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 LY6G6DO95868 133 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 PGRP06401 933 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 FKBP2P26885 142 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 EPHA3P29320 983 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 CDKN2CP42773 168 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 CSNK2A1P68400 391 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 TXNL4AP83876 142 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 PDK3Q15120 406 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 GPAT3Q53EU6 434 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 NCMAPQ5T1S8 102 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 SEZ6L2Q6UXD5 910 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 CLEC9AQ6UXN8 241 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 ZNF621Q6ZSS3 439 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 BHLHA15Q7RTS1 189 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 GRINAQ7Z429 371 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 GALNT5Q7Z7M9 940 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 HMGN2P46Q86SG4 172 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 ARFGAP2Q8N6H7 521 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 TRIML2Q8N7C3 387 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 ANKFN1Q8N957 763 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 ANKRD42Q8N9B4 389 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 PIWIL2Q8TC59 973 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 CNOT9Q92600 299 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 AKAP1Q92667 903 aaKnown RBP eCLIP8.61□□□□□ -1.03
VPS41-201ENST00000265745 EAF1Q96JC9 268 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 ARL5BQ96KC2 179 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 OR52E6Q96RD3 313 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 PANX1Q96RD7 426 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 ZNF300Q96RE9 604 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 INPP5KQ9BT40 448 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 BDH2Q9BUT1 245 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 CXorf56Q9H5V9 222 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 MTHFD2LQ9H903 347 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 NGBQ9NPG2 151 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 EXOSC3Q9NQT5 275 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 CHRNA9Q9UGM1 479 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 PRSS50Q9UI38 385 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 LIPT1Q9Y234 373 aa8.61□□□□□ -1.03
VPS41-201ENST00000265745 TMA7Q9Y2S6 64 aaKnown RBP8.61□□□□□ -1.03
VPS41-201ENST00000265745 GOLGA8QA0A0J9YX86 632 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 TMEM120BA0PK00 339 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 GOLGA8OA6NCC3 632 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 DPRXA6NFQ7 191 aa8.6□□□□□ -1.03
VPS41-201ENST00000265745 TRPC5OSA6NMA1 111 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms