RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FLVCR2Q9UPI3 526 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 MRPS2Q9Y399 296 aaKnown RBP9.29□□□□□ -0.92
LIG3-201ENST00000262327 A0A087WV48 116 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 GXYLT2A0PJZ3 443 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 BHLHE40O14503 412 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 OR5F1O95221 314 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 FGFBP1Q14512 234 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 CST6Q15828 149 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 SLC36A2Q495M3 483 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 ARSKQ6UWY0 536 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 CDH24Q86UP0 819 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 ZNF687Q8N1G0 1237 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 TOMM5Q8N4H5 51 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 SDR9C7Q8NEX9 313 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 SMPDL3BQ92485 455 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 BPIFA2Q96DR5 249 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 C10orf90Q96M02 699 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 TNFRSF13CQ96RJ3 184 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 NDC1Q9BTX1 674 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 MTHFD2LQ9H903 347 aaPredicted RBP9.29□□□□□ -0.92
LIG3-201ENST00000262327 FANCFQ9NPI8 374 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 SLCO1C1Q9NYB5 712 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 EIF3KQ9UBQ5 218 aaKnown RBP9.29□□□□□ -0.92
LIG3-201ENST00000262327 TMEM5Q9Y2B1 443 aa9.29□□□□□ -0.92
LIG3-201ENST00000262327 A0A0G2JK05 382 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ANKRD61A6NGH8 418 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FAM171A2A8MVW0 826 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 H0Y8X5 98 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SOX30O94993 753 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 DHFRP00374 187 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MT-ND5P03915 603 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TCRBP04435 133 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 PVRP15151 417 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ATF1P18846 271 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CLDN12P56749 244 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 VSX2P58304 361 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 ZNF85Q03923 595 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ENPP2Q13822 863 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 GALEQ14376 348 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TMEM65Q6PI78 240 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SLC44A3Q8N4M1 653 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 OR4K13Q8NH42 304 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ZNF764Q96H86 408 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 HYLS1Q96M11 299 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 PDCD1LG2Q9BQ51 273 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CACNG6Q9BXT2 260 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TEX101Q9BY14 249 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 RBCK1Q9BYM8 510 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CHIAQ9BZP6 476 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 IL21RQ9HBE5 538 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FGF22Q9HCT0 170 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ZFP64Q9NPA5 681 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MEPEQ9NQ76 525 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 PHPT1Q9NRX4 125 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 STARD5Q9NSY2 213 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CALML5Q9NZT1 146 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TBC1D29Q9UFV1 150 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TRAPPC13A5PLN9 417 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 IDSB3KWA1 339 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MBTPS2O43462 519 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 PRKNO60260 465 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 ADAM11O75078 769 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FCER2P06734 321 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 NT5EP21589 574 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 STOMP27105 288 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CMPK1P30085 196 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SGCGQ13326 291 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TMEM31Q5JXX7 168 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 LIX1LQ8IVB5 337 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 TMEM52Q8NDY8 209 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SLC22A8Q8TCC7 542 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FBXW5Q969U6 566 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MARVELD3Q96A59 401 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MS4A4EQ96PG1 132 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 HDAC8Q9BY41 377 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SLC25A18Q9H1K4 315 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 OR51J1Q9H342 316 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 C8orf33Q9H7E9 229 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 UBE2ZQ9H832 354 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 A0A1W2PQU0 124 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 I3L521 148 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 PRICKLE3O43900 615 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 CTSVO60911 334 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 WNT1P04628 370 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SBK2P0C263 348 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 EEF1A1P68104 462 aaKnown RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 ACSM1Q08AH1 577 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 MFSD13AQ14CX5 517 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 NNATQ16517 81 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 ST3GAL2Q16842 350 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 C2orf27AQ580R0 203 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 FAAP20Q6NZ36 180 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 CREB3L2Q70SY1 520 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 RANBP3LQ86VV4 465 aaPredicted RBP9.28□□□□□ -0.92
LIG3-201ENST00000262327 GID4Q8IVV7 300 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 SFTPA2Q8IWL1 248 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 GJD3Q8N144 294 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 COX18Q8N8Q8 333 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 OR4K14Q8NGD5 310 aa9.28□□□□□ -0.92
LIG3-201ENST00000262327 THAP4Q8WY91 577 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms