RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 UQCRBP14927 111 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 CD1EP15812 388 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 H2AFXP16104 143 aaPredicted RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 ENPP1P22413 925 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 AGTR1P30556 359 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 APOBEC1P41238 236 aaKnown RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 IDH2P48735 452 aaKnown RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 ANKRD34AQ69YU3 496 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 ZNF550Q7Z398 422 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 GRINAQ7Z429 371 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 TUSC5Q8IXB3 177 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 SLC43A2Q8N370 569 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 FAM71CQ8NEG0 241 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 SLC25A43Q8WUT9 341 aaPredicted RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 CNOT9Q92600 299 aaKnown RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 EBF4Q9BQW3 602 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 RAD21L1Q9H4I0 556 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 CCM2LQ9NUG4 571 aaPredicted RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 THUMPD1Q9NXG2 353 aaKnown RBP12.32□□□□□ -0.44
PNKP-228ENST00000637325 KLHL13Q9P2N7 655 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 ITPR3Q14573 2671 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 CELSR1Q9NYQ6 3014 aa12.32□□□□□ -0.44
PNKP-228ENST00000637325 SULT2B1O00204 365 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 NR5A2O00482 541 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 BCHEP06276 602 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 YES1P07947 543 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CCNA2P20248 432 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 HTR3AP46098 478 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CRISP3P54108 245 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CSNK2A1P68400 391 aaPredicted RBP12.31□□□□□ -0.44
PNKP-228ENST00000637325 RASGEF1BQ0VAM2 473 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 KEAP1Q14145 624 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 GTDC1Q4AE62 458 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 SYT14P1Q58G82 188 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 SLC2A7Q6PXP3 512 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 TMPPEQ6ZT21 453 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 OR52P1PQ8NH57 321 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CKAP2Q8WWK9 683 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 GTF2H4Q92759 462 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 ZHX1-C8orf76Q96EF9 292 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 AURKBQ96GD4 344 aaPredicted RBP12.31□□□□□ -0.44
PNKP-228ENST00000637325 MAGEB18Q96M61 343 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 TACO1Q9BSH4 297 aaKnown RBP12.31□□□□□ -0.44
PNKP-228ENST00000637325 GP6Q9HCN6 339 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CTPS2Q9NRF8 586 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CCDC167Q9P0B6 97 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 C6orf203Q9P0P8 240 aaPredicted RBP12.31□□□□□ -0.44
PNKP-228ENST00000637325 KLHL9Q9P2J3 617 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 CHRNA9Q9UGM1 479 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 PCDHB14Q9Y5E9 798 aa12.31□□□□□ -0.44
PNKP-228ENST00000637325 MAP1AP78559 2803 aaPredicted RBP12.31□□□□□ -0.44
PNKP-228ENST00000637325 HIVEP1P15822 2718 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 A0A096LPI6 279 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 CLIC1O00299 241 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 RAF1P04049 648 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 NID1P14543 1247 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 PPP3CBP16298 524 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 RPS4Y1P22090 263 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 CRYGSP22914 178 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 FKBP2P26885 142 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 MRPL19P49406 292 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 DIO1P49895 249 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 LARS2Q15031 903 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 TESK1Q15569 626 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 LIN52Q52LA3 116 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 AGKQ53H12 422 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 MRPL2Q5T653 305 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 PAMR1Q6UXH9 720 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 NUFIP2Q7Z417 695 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 ZNF440Q8IYI8 595 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 SLC38A5Q8WUX1 472 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 SPDL1Q96EA4 605 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 PIK3IP1Q96FE7 263 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 THOC1Q96FV9 657 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 CCDC106Q9BWC9 280 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 PAIP1Q9H074 479 aaKnown RBP12.3□□□□□ -0.44
PNKP-228ENST00000637325 ZNF232Q9UNY5 417 aa12.3□□□□□ -0.44
PNKP-228ENST00000637325 CADP27708 2225 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 TMED7-TICAM2A0A0A6YYA0 188 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 A0A0G2JPF8 293 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 CFAP73A6NFT4 308 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 HNRNPCL2B2RXH8 293 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 HNRNPCL3B7ZW38 293 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 C5orf58C9J3I9 102 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 AP3D1O14617 1153 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 CYTIPO60759 359 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 HNRNPCL1O60812 293 aaKnown RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 FESP07332 822 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 TFPTP0C1Z6 253 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 HNRNPCL4P0DMR1 293 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 NCF2P19878 526 aaPredicted RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 CCKARP32238 428 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 CLK1P49759 484 aaKnown RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 POLR2HP52434 150 aaKnown RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 MVDP53602 400 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 OR2B6P58173 313 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 IRX1P78414 480 aaPredicted RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 SQLEQ14534 574 aa12.29□□□□□ -0.44
PNKP-228ENST00000637325 RPS26P11Q5JNZ5 115 aaPredicted RBP12.29□□□□□ -0.44
PNKP-228ENST00000637325 BLOC1S3Q6QNY0 202 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms