RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DSN1Q9H410 356 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 TAS2R10Q9NYW0 307 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 HRH3Q9Y5N1 445 aa16.77■□□□□ 0.28
CLN3-254ENST00000637050 H3BN98 237 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 GNB5O14775 395 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 TNFAIP8O95379 198 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 CCL3P10147 92 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 GP1BBP13224 206 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 POU1F1P28069 291 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 CTU2Q2VPK5 515 aaKnown RBP16.76■□□□□ 0.27
CLN3-254ENST00000637050 TBC1D25Q3MII6 688 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 SLC22A10Q63ZE4 541 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 ISLR2Q6UXK2 745 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 GPALPP1Q8IXQ4 340 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 CLEC1AQ8NC01 280 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 DPH1Q9BZG8 443 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 LHPPQ9H008 270 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 ING2Q9H160 280 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 ZNF696Q9H7X3 374 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 MED11Q9P086 117 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 KLK13Q9UKR3 277 aa16.76■□□□□ 0.27
CLN3-254ENST00000637050 IGKV1D-42A0A075B6H8 117 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ANKRD33BA6NCL7 494 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 IGF2P01344 180 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 DLX5P56178 289 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 IL5RAQ01344 420 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 SRSF6Q13247 344 aaKnown RBP16.75■□□□□ 0.27
CLN3-254ENST00000637050 CLN3Q13286 438 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ATP1A1-AS1Q5TC04 95 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 SLX4IPQ5VYV7 408 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 TMEM236Q5W0B7 351 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 RTL4Q6ZR62 310 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 P3H2Q8IVL5 708 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 BEST3Q8N1M1 668 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ZNF786Q8N393 782 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 CLDN22Q8N7P3 220 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 THAP4Q8WY91 577 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ST8SIA1Q92185 356 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 EGLN3Q9H6Z9 239 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 PROK2Q9HC23 129 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 IL20Q9NYY1 176 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 TEKT2Q9UIF3 430 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 OSGIN1Q9UJX0 560 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 MYRFQ9Y2G1 1151 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 PCDHGB6Q9Y5F9 930 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 PTPRZ1P23471 2315 aaPredicted RBP16.75■□□□□ 0.27
CLN3-254ENST00000637050 HTR3EA5X5Y0 456 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 UNC119BA6NIH7 251 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ITGA3P26006 1051 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 HLCSP50747 726 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 CRYZQ08257 329 aaKnown RBP16.75■□□□□ 0.27
CLN3-254ENST00000637050 PRAMEF20Q5VT98 475 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ZNF620Q6ZNG0 422 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 GRINAQ7Z429 371 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 FAM81AQ8TBF8 368 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 TMEM234Q8WY98 164 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 YTHDF1Q9BYJ9 559 aaKnown RBP16.75■□□□□ 0.27
CLN3-254ENST00000637050 PLA2G12AQ9BZM1 189 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 STMN3Q9NZ72 180 aa16.75■□□□□ 0.27
CLN3-254ENST00000637050 ENO4A6NNW6 628 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 ETV2O00321 342 aaPredicted RBP16.74■□□□□ 0.27
CLN3-254ENST00000637050 WT1P19544 449 aaPredicted RBP16.74■□□□□ 0.27
CLN3-254ENST00000637050 ELK4P28324 431 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 GIPRP48546 466 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 POLR2HP52434 150 aaKnown RBP16.74■□□□□ 0.27
CLN3-254ENST00000637050 CDK5Q00535 292 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 FOXC1Q12948 553 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 CDK5R2Q13319 367 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 MAD2L1BPQ15013 274 aaPredicted RBP16.74■□□□□ 0.27
CLN3-254ENST00000637050 INPP5JQ15735 1006 aaPredicted RBP16.74■□□□□ 0.27
CLN3-254ENST00000637050 C6orf141Q5SZD1 244 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 BROXQ5VW32 411 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 C12orf73Q69YU5 71 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 LAIR2Q6ISS4 152 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 ENTHD1Q8IYW4 607 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 CYP4Z2PQ8N1L4 340 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 DEPDC4Q8N2C3 294 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 FADS6Q8N9I5 356 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 WDSUB1Q8N9V3 476 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 OR2M3Q8NG83 312 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 OR8D4Q8NGM9 314 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 UBE2FQ969M7 185 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 SLC25A19Q9HC21 320 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 WDR70Q9NW82 654 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 RNF6Q9Y252 685 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 CDH10Q9Y6N8 788 aa16.74■□□□□ 0.27
CLN3-254ENST00000637050 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 EIF4E1BA6NMX2 242 aaKnown RBP16.73■□□□□ 0.27
CLN3-254ENST00000637050 EFCAB9A8MZ26 197 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 NKX2-8O15522 239 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 WISP1O95388 367 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 PRKCAP17252 672 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 FUT1P19526 365 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 CXCR1P25024 350 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 HTR3AP46098 478 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 CYB561P49447 251 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 RRADP55042 308 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 SOX8P57073 446 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 CDC42P60953 191 aa16.73■□□□□ 0.27
CLN3-254ENST00000637050 EGR4Q05215 589 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms