RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OTCP00480 354 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 CRYAAP02489 173 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 ADRA2AP08913 450 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 ANXA4P09525 319 aaPredicted RBP12.56□□□□□ -0.4
CLN3-249ENST00000636685 HSD3B1P14060 373 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 CDH2P19022 906 aaPredicted RBP12.56□□□□□ -0.4
CLN3-249ENST00000636685 HSD3B2P26439 372 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 CALCRP30988 508 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 THBS4P35443 961 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SUMO3P55854 103 aaPredicted RBP12.56□□□□□ -0.4
CLN3-249ENST00000636685 HSPB3Q12988 150 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 TSNAXIP1Q2TAA8 658 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 FBLN7Q53RD9 439 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SPIN4Q56A73 249 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SLC25A53Q5H9E4 307 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 C3orf33Q6P1S2 294 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 KLC3Q6P597 504 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 LRIG3Q6UXM1 1119 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 CASP12Q6UXS9 341 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 C3orf62Q6ZUJ4 267 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SPATA21Q7Z572 469 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 MTERF4Q7Z6M4 381 aaKnown RBP12.56□□□□□ -0.4
CLN3-249ENST00000636685 CDK20Q8IZL9 346 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 CDRT4Q8N9R6 151 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 RFWD2Q8NHY2 731 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 DNAJA3Q96EY1 480 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 OSBPL9Q96SU4 736 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 KATNB1Q9BVA0 655 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 KCNF1Q9H3M0 494 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 SEC61A2Q9H9S3 476 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 MIEF1Q9NQG6 463 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 GIN1Q9NXP7 522 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 JRKLQ9Y4A0 524 aa12.56□□□□□ -0.4
CLN3-249ENST00000636685 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 A0A096LPK6 155 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 GPR171O14626 319 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 RPS17P08708 135 aaKnown RBP12.55□□□□□ -0.4
CLN3-249ENST00000636685 COL8A2P25067 703 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 LCN1P31025 176 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 HTR6P50406 440 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 LMO4P61968 165 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 NAAAQ02083 359 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 TGFBR3Q03167 851 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 HGFACQ04756 655 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 QPRTQ15274 297 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 TIGD2Q4W5G0 525 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 ELFN2Q5R3F8 820 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 MROH9Q5TGP6 573 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 TSPO2Q5TGU0 170 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 FAM71E1Q6IPT2 247 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 CYS1Q717R9 158 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 SZRD1Q7Z422 152 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 CCDC103Q8IW40 242 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 LRRC8AQ8IWT6 810 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 KLHL7Q8IXQ5 586 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 SIGLECL1Q8N7X8 197 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 COX18Q8N8Q8 333 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 RNF217Q8TC41 542 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 ZNF483Q8TF39 744 aaPredicted RBP12.55□□□□□ -0.4
CLN3-249ENST00000636685 GIMAP5Q96F15 307 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 C16orf58Q96GQ5 468 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 SLITRK2Q9H156 845 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 NTN4Q9HB63 628 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 ACSS1Q9NUB1 689 aaPredicted RBP12.55□□□□□ -0.4
CLN3-249ENST00000636685 TAS2R7Q9NYW3 318 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 CORINQ9Y5Q5 1042 aa12.55□□□□□ -0.4
CLN3-249ENST00000636685 HMX2A2RU54 273 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 GTPBP1O00178 669 aaKnown RBP12.54□□□□□ -0.4
CLN3-249ENST00000636685 PRSS23O95084 383 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 NPR2P20594 1047 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 PRTN3P24158 256 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 SLC16A1P53985 500 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 CSNK2A1P68400 391 aaPredicted RBP12.54□□□□□ -0.4
CLN3-249ENST00000636685 IL13RA1P78552 427 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 DR1Q01658 176 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 ZNF763Q0D2J5 394 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 KLHL26Q53HC5 615 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-249ENST00000636685 ANKRD16Q6P6B7 361 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 GALNT18Q6P9A2 607 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 CCDC91Q7Z6B0 441 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 C1QL4Q86Z23 238 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 TMCO5AQ8N6Q1 288 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 NANPQ8TBE9 248 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 CKAP2Q8WWK9 683 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 SLC52A3Q9NQ40 469 aa12.54□□□□□ -0.4
CLN3-249ENST00000636685 ETV2O00321 342 aaPredicted RBP12.53□□□□□ -0.4
CLN3-249ENST00000636685 SMIM24O75264 130 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 KRT6AP02538 564 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 KRT6BP04259 564 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 IFI6P09912 130 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 CECR9P0C854 216 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 FPR2P25090 351 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 MPGP29372 298 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 GPC1P35052 558 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 SERPINB4P48594 390 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 KRT6CP48668 564 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 CCR4P51679 360 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 SRSF4Q08170 494 aaKnown RBP12.53□□□□□ -0.4
CLN3-249ENST00000636685 ZP4Q12836 540 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms