RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	THUMPD1	Q9NXG2	353 aa	Known RBP	12.69	□□□□□ -0.38
PNKP-223	ENST00000629179	UQCRHL	A0A096LP55	91 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	TRBV5-3	A0A0A0MS03	114 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	IGHV3-15	A0A0B4J1V0	119 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179		A0A0G2JPF8	293 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179		A0A1W2PP18	115 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	FAM221A	A4D161	298 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	TMEM247	A6NEH6	219 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179		A6NNC1	897 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	HNRNPCL2	B2RXH8	293 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	HNRNPCL3	B7ZW38	293 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	HNRNPCL1	O60812	293 aa	Known RBP	12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	GKN3P	P0CG01	181 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	HNRNPCL4	P0DMR1	293 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	TFPI	P10646	304 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	BMP2	P12643	396 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	POU2F1	P14859	743 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	KLK2	P20151	261 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	CCNA2	P20248	432 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	ENPP1	P22413	925 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	APOBEC1	P41238	236 aa	Known RBP	12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	KCNJ5	P48544	419 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	RAC3	P60763	192 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	EPS8	Q12929	822 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	FADD	Q13158	208 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	DAZAP2	Q15038	168 aa	Predicted RBP	12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	EXOC3L2	Q2M3D2	409 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	GTF2IRD2B	Q6EKJ0	949 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	GRINA	Q7Z429	371 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	GTF2IRD2	Q86UP8	949 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	ADGRG3	Q86Y34	549 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	C10orf111	Q8N326	155 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	CLIP4	Q8N3C7	705 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	OR6K3	Q8NGY3	331 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	RNF128	Q8TEB7	428 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	DNAJA3	Q96EY1	480 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	SIKE1	Q9BRV8	207 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	SLC39A3	Q9BRY0	314 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	TMEM120A	Q9BXJ8	343 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	POLDIP3	Q9BY77	421 aa	Known RBP	12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	IKZF5	Q9H5V7	419 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	A4GALT	Q9NPC4	353 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	GLRX2	Q9NS18	164 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	RASSF1	Q9NS23	344 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	ELOVL5	Q9NYP7	299 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	TRIM33	Q9UPN9	1127 aa		12.68	□□□□□ -0.38
PNKP-223	ENST00000629179	SH3D21	A4FU49	640 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	CDHR4	A6H8M9	788 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	CFAP73	A6NFT4	308 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	PABPC4L	P0CB38	370 aa	Known RBP	12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	AGTR1	P30556	359 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	GUCY1A3	Q02108	690 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	LIN52	Q52LA3	116 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	HSP90B2P	Q58FF3	399 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	SYT14P1	Q58G82	188 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	DLEU7	Q6UYE1	221 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	TMPPE	Q6ZT21	453 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	TUSC5	Q8IXB3	177 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	ARL5B	Q96KC2	179 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	DACH2	Q96NX9	599 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	WFIKKN1	Q96NZ8	548 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	OR11A1	Q9GZK7	315 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	C12orf49	Q9H741	205 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	CHRNA9	Q9UGM1	479 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	LEF1	Q9UJU2	399 aa	Predicted RBP	12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	OSGIN1	Q9UJX0	560 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	ITGB1BP2	Q9UKP3	347 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	ZNF232	Q9UNY5	417 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	ZNF443	Q9Y2A4	671 aa	Predicted RBP	12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	CHST2	Q9Y4C5	530 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	CSMD1	Q96PZ7	3565 aa		12.67	□□□□□ -0.38
PNKP-223	ENST00000629179	PRRC2A	P48634	2157 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	TMED7-TICAM2	A0A0A6YYA0	188 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	C5orf58	C9J3I9	102 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	SULT2B1	O00204	365 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	SMAD9	O15198	467 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	PRKD3	O94806	890 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	PGM3	O95394	542 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	VIM	P08670	466 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	TROVE2	P10155	538 aa	Known RBP eCLIP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	ARAF	P10398	606 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	PPIB	P23284	216 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	TACR3	P29371	465 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	UGT2B10	P36537	528 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	ACAA2	P42765	397 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	DIO1	P49895	249 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	LARS2	Q15031	903 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	RNPS1	Q15287	305 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	RUNDC3A	Q59EK9	446 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	GCNT6	Q5T4J0	391 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	METTL21C	Q5VZV1	264 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	CGB2	Q6NT52	195 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	NUFIP2	Q7Z417	695 aa	Known RBP	12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	CDH24	Q86UP0	819 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	RETREG3	Q86VR2	466 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	LURAP1L	Q8IV03	231 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	ZNF440	Q8IYI8	595 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	NFKBID	Q8NI38	313 aa		12.66	□□□□□ -0.38
PNKP-223	ENST00000629179	SLC25A43	Q8WUT9	341 aa	Predicted RBP	12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms